Evidence map›Paper›PMID 39962243›Full record

ArticleCell death and differentiation2025

The LINC01315-encoded small protein YAPer-ORF competes with PRP4k to hijack YAP signaling to aberrantly promote cell growth.

Zhu Xie, Chao Li, Rui Huang, Bo Wu, Qian Huang, Zhe Zhang, Tongjin Zhao, Lingqian Wu, Chengtao Li, Jianfeng Shen and 1 more

Abstract read
In one paragraph

Article in Cell death and differentiation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Zhu Xie *Obstetrics and Gynecology Hospital, State Key Laboratory of Genetic Engineering, Shanghai Key Laboratory of Metabolic Remodeling and Health, Institute of Metabolism and Integrative Biology, Fudan University, Shanghai, 200438, China.ORCID 0009-0005-3275-6982
Chao Li *Obstetrics and Gynecology Hospital, State Key Laboratory of Genetic Engineering, Shanghai Key Laboratory of Metabolic Remodeling and Health, Institute of Metabolism and Integrative Biology, Fudan University, Shanghai, 200438, China.
Rui Huang *Department of Ophthalmology, Ninth People's Hospital, Shanghai JiaoTong University School of Medicine, Institute of Translational Medicine, National Facility for Translational Medicine, Shanghai JiaoTong University, Shanghai, 200240, China.
Bo WuPrenatal Diagnosis Center of Shenzhen Maternity & Child Healthcare Hospital, Shenzhen, 518028, China.
Qian HuangCancer Center, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200081, China.
Zhe ZhangDepartment of Ophthalmology, Ninth People's Hospital, Shanghai JiaoTong University School of Medicine, Institute of Translational Medicine, National Facility for Translational Medicine, Shanghai JiaoTong University, Shanghai, 200240, China.
Tongjin ZhaoShanghai Key Laboratory of Metabolic Remodeling and Health, Institute of Metabolism and Integrative Biology, Fudan University, Shanghai, 200438, China.ORCID 0000-0001-6861-3071
Lingqian WuCenter for Medical Genetics, Hunan Key Laboratory of Medical Genetics & Hunan Key Laboratory of Animal Models for Human Diseases, School of Life Sciences, Central South University, Changsha, 410078, China.
Chengtao LiShanghai Medical College, Fudan University, Shanghai, 200032, China.
Jianfeng ShenDepartment of Ophthalmology, Ninth People's Hospital, Shanghai JiaoTong University School of Medicine, Institute of Translational Medicine, National Facility for Translational Medicine, Shanghai JiaoTong University, Shanghai, 200240, China. jfshen@shsmu.edu.cn.ORCID 0000-0001-9779-6225
Hongyan WangObstetrics and Gynecology Hospital, State Key Laboratory of Genetic Engineering, Shanghai Key Laboratory of Metabolic Remodeling and Health, Institute of Metabolism and Integrative Biology, Fudan University, Shanghai, 200438, China. wanghy@fudan.edu.cn.ORCID 0000-0002-9422-5264

Funding

China Postdoctoral Science Foundation 2023T160113National Natural Science Foundation of China (National Science Foundation of China) 81930036National Natural Science Foundation of China (National Science Foundation of China) 82150008National Natural Science Foundation of China (National Science Foundation of China) 82472752
6 · The paper itself

Abstract

The dysregulation of YAP activity is implicated in abnormal organ size and the pathogenesis of diverse diseases, including cancer. However, the functional regulation of YAP activity by lncRNA-encoded peptides remains elusive. In this study, we report the identification of a small protein (93 aa) encoded by the lncRNA LINC01315. This small protein, termed YAPer-ORF, preferentially interacted with GNAQ/11 mutants to augment YAP activity. Mechanistically, YAPer-ORF was located in the nucleus and competed with YAP to bind the nuclear kinase PRP4K to hinder YAP phosphorylation. This decreased phosphorylation of YAP by YAPer-ORF promoted YAP retention in the nucleus and facilitated the expression of downstream target genes such as CCND1. In both cancerous and noncancerous models, YAPer-ORF prominently drove cell proliferation in a CCND1-dependent manner. Notably, cardiac-specific genetic knock-in of the human YAPer-ORF in mice significantly increased heart size through increased cardiomyocyte proliferation, underscoring the role of YAPer-ORF in cell proliferation. Moreover, treatment with an anti-YAPer-ORF neutralizing antibody effectively suppressed uveal melanoma growth, highlighting the therapeutic potential of targeting YAPer-ORF. These findings collectively establish YAPer-ORF as a critical regulator of YAP activity, further highlighting the disruption of YAPer-ORF activity as a potential therapeutic strategy against YAP-driven human cancers and developmental diseases.

Indexed as

Adaptor Proteins, Signal TransducingProtein Serine-Threonine KinasesRNA, Long NoncodingTranscription FactorsAnimalsCell Cycle ProteinsCell ProliferationCyclin D1HumansMicePhosphorylationSignal TransductionYAP-Signaling ProteinsAdaptor Proteins, Signal TransducingCell Cycle ProteinsCyclin D1Protein Serine-Threonine KinasesRNA, Long NoncodingTranscription FactorsYAP1 protein, humanYAP-Signaling Proteins

Identifiers

PMID39962243
PMCPMC12325761

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.