Evidence map›Paper›PMID 39962089›Full record

ArticleNature communications2025

Time-resolved X-ray solution scattering unveils the events leading to hemoglobin heme capture by staphylococcal IsdB.

Omar De Bei, Marialaura Marchetti, Stefano Guglielmo, Eleonora Gianquinto, Francesca Spyrakis, Barbara Campanini, Stefano Bettati, Matteo Levantino, Luca Ronda

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Cryo-EM provides insight into how thebioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. The Pathogenicity Mechanisms ofInternational journal of molecular sciences · 2025
    Review
  6. Hemoglobin receptor redundancy inJournal of structural biology: X · 2025
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Omar De BeiDepartment of Medicine and Surgery, University of Parma, Via Volturno, 39, Parma, Italy.ORCID http://orcid.org/0000-0003-3916-8858
Marialaura MarchettiDepartment of Medicine and Surgery, University of Parma, Via Volturno, 39, Parma, Italy.ORCID http://orcid.org/0000-0002-4615-6786
Stefano GuglielmoDepartment of Drug Science and Technology, University of Turin, Via Giuria, 9, Turin, Italy.
Eleonora GianquintoDepartment of Drug Science and Technology, University of Turin, Via Giuria, 9, Turin, Italy.
Francesca SpyrakisDepartment of Drug Science and Technology, University of Turin, Via Giuria, 9, Turin, Italy.
Barbara CampaniniDepartment of Food and Drug, University of Parma, Parco Area delle Scienze, 27/A, Parma, Italy.ORCID http://orcid.org/0000-0003-0359-0627
Stefano BettatiDepartment of Medicine and Surgery, University of Parma, Via Volturno, 39, Parma, Italy.ORCID http://orcid.org/0000-0001-6787-0594
Matteo LevantinoESRF - The European Synchrotron, 71 Avenue des Martyrs, CS40220, 38043, Grenoble, Cedex, France. matteo.levantino@esrf.fr.ORCID http://orcid.org/0000-0002-1224-4809
Luca RondaDepartment of Medicine and Surgery, University of Parma, Via Volturno, 39, Parma, Italy. luca.ronda@unipr.it.ORCID http://orcid.org/0000-0002-5389-2669

Funding

European Synchrotron Radiation Facility (ESRF) IH-LS-3074 and LS-2807Ministero dell'Istruzione, dell'Università e della Ricerca (Ministry of Education, University and Research) PRIN 2020AE3LTAMinistero dell'Istruzione, dell'Università e della Ricerca (Ministry of Education, University and Research) PRIN 2022RCP52YUniversità degli Studi di Parma (University of Parma) Scientific Equipment Fund 2018
6 · The paper itself

Abstract

Infections caused by Staphylococcus aureus depend on its ability to acquire nutrients. One essential nutrient is iron, which is obtained from the heme of the human host hemoglobin (Hb) through a protein machinery called Iron-regulated surface determinant (Isd) system. IsdB is the protein in charge of heme extraction from Hb, which is the first step of the chain of events leading to iron transfer to the bacterium cell interior. In order to elucidate the molecular events leading from the formation of the initial IsdB:Hb complex to heme extraction, we use time-resolved X-ray solution scattering (TR-XSS) in combination with rapid mixing triggering. We succeed in defining the stoichiometry of IsdB:Hb binding and in describing the kinetics of the subsequent structural changes. The presented approach is potentially applicable to unveil the complex kinetic pathways generated by protein-protein interaction in different biological systems.

Indexed as

Bacterial ProteinsHemeHemoglobinsStaphylococcus aureusCation Transport ProteinsHumansIronKineticsProtein BindingX-Ray DiffractionBacterial ProteinsCation Transport ProteinsHemeHemoglobinsIronIsdB protein, Staphylococcus aureus

Identifiers

PMID39962089
PMCPMC11832919

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.