Evidence map›Paper›PMID 39961917›Full record

ArticleArchives of virology2025

Complete genome sequence analysis of the novel bacteriophage PA-1 infecting phytopathogenic Pantoea ananatis in Malaysia.

Pritpal Singh Sarmak Singh, Wai Keat Toh, Boon Hoe Lim, Hann Ling Wong, Pek Chin Loh

Abstract read
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In one paragraph

Article in Archives of virology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Pritpal Singh Sarmak SinghFaculty of Science, Universiti Tunku Abdul Rahman, Jalan Universiti, Kampar, Perak, 31900, Malaysia.
Wai Keat TohFaculty of Science, Universiti Tunku Abdul Rahman, Jalan Universiti, Kampar, Perak, 31900, Malaysia.
Boon Hoe LimFaculty of Science, Universiti Tunku Abdul Rahman, Jalan Universiti, Kampar, Perak, 31900, Malaysia.
Hann Ling WongFaculty of Science, Universiti Tunku Abdul Rahman, Jalan Universiti, Kampar, Perak, 31900, Malaysia. hlwong@utar.edu.my.ORCID http://orcid.org/0000-0001-8903-1812
Pek Chin LohFaculty of Science, Universiti Tunku Abdul Rahman, Jalan Universiti, Kampar, Perak, 31900, Malaysia. pcloh85@gmail.com.ORCID http://orcid.org/0000-0003-4865-0523

Funding

Ino Nature Sdn Bhd 8043/001Universiti Tunku Abdul Rahman UTARRF no. IPSR/RMC/UTARRF/2017-C1/L17
6 · The paper itself

Abstract

A novel bacteriophage, PA-1, was isolated using Pantoea ananatis, a bacterium that is responsible for rice leaf blight worldwide, as the host. PA-1 has a linear genome of 46,332 bp with a GC content of 50.55%. It contains 83 protein-encoding genes, and no tRNA-encoding genes were detected. The genome is densely organized, with an average CDS size of 516 bp, and 92.38% of the genome consists of protein-coding regions. Whole-genome sequencing and phylogenetic and morphological analysis showed that PA-1 is a novel phage that is phylogenetically distinct, suggesting that it may represent a new genus within the class Caudoviricetes.​.

Indexed as

BacteriophagesGenome, ViralPantoeaBase CompositionMalaysiaOpen Reading FramesOryzaPhylogenyPlant DiseasesWhole Genome Sequencing

Identifiers

PMID39961917

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.