Evidence map›Paper›PMID 39957629›Full record

ArticleThe New phytologist2025

Building microbial synthetic communities: get inspired by the design of synthetic plant communities.

Paloma Durán, Fabienne Vailleau, Fabrice Roux

Abstract read
In one paragraph

Article in The New phytologist, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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  7. Artificial soil (ArtSoil): Recreating soil conditions in synthetic plant growth media.The Plant journal : for cell and molecular biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Paloma DuránLIPME, INRAE, CNRS, Université de Toulouse, 31326, Castanet-Tolosan, France.ORCID 0000-0002-4383-6196
Fabienne VailleauLIPME, INRAE, CNRS, Université de Toulouse, 31326, Castanet-Tolosan, France.ORCID 0000-0002-6879-2695
Fabrice RouxLIPME, INRAE, CNRS, Université de Toulouse, 31326, Castanet-Tolosan, France.ORCID 0000-0001-8059-5638

Funding

European Union's Horizon 2020 951444-PATHOCOM
6 · The paper itself

Abstract

In the last decade, the generation of host-associated microbial culture collections has allowed the fine disentangling of complex relationships between commensal microbes and their hosts, and within-microbiota interactions. Specifically, these culture collections have been used to construct microbial synthetic communities (SynComs), which allow the reconstruction of host microbiota in laboratory conditions. In three recent perspective publications, the importance of this tool has been highlighted, and the ground rules of utilization and designing of such SynComs have been laid out. It is important to note that although microbial SynComs are used to understand intricate ecological interactions occurring in natural conditions, the intraspecific genetic diversity present in natural microbial communities has been seldom considered in the design of interspecific microbial SynComs so far. In this Viewpoint, we therefore argue that designing microbial SynComs could benefit from recent developments in the design of synthetic plant communities, or plant SynComs. For instance, considering intraspecific plant genetic diversity and its effects on intra- and interspecific plant-plant interactions appears essential to better understand and predict highly productive and stable plant communities. Therefore, considering genetic diversity within microbial species undoubtedly represents an exciting opportunity to design innovative microbial SynComs.

Indexed as

MicrobiotaPlantsSynthetic BiologyGenetic Variationgenetic diversityhost‐microbiota interactionsmicrobial SynComsmicrobiotaplant SynComs

Identifiers

PMID39957629
PMCPMC11923396

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.