Evidence map›Paper›PMID 39953408›Full record

ArticleBMC genomics2025

Differential expression of tRNA-derived small RNAs in Juvenile and adult sheep skin: implications for developmental and immune regulation.

Lina Ma, Fengru Zhao, Zhengwei Zhao, Letian Zhang, Jiajie Yao, Qing Ma, Xuemei Deng, Jiankui Wang, Yaling Gu, Juan Zhang and 1 more

Abstract read
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Transfer RNA Fragments in Diseases of Sensory Organs.International journal of molecular sciences · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Lina Ma *College of Animal Science and Technology, Ningxia University, Yinchuan, 750021, China.
Fengru Zhao *Beijing Dairy Cattle Center, Beijing, 100192, China.
Zhengwei ZhaoInstitute of Animal Science, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan, 750002, China.
Letian ZhangBeijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China.
Jiajie YaoBeijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China.
Qing MaInstitute of Animal Science, Ningxia Academy of Agriculture and Forestry Sciences, Yinchuan, 750002, China.
Xuemei DengBeijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China.
Jiankui WangBeijing Key Laboratory for Animal Genetic Improvement & Key Laboratory of Animal Genetics, Breeding and Reproduction, Ministry of Agriculture & State Key Laboratory of Animal Biotech Breeding, China Agricultural University, Beijing, 100193, China. jiankui@cau.edu.cn.
Yaling GuCollege of Animal Science and Technology, Ningxia University, Yinchuan, 750021, China. guyaling@sina.com.
Juan ZhangCollege of Animal Science and Technology, Ningxia University, Yinchuan, 750021, China. zhangjkathy@126.com.
Hesham Y A DarwishDepartment of Applied Biotechnology, Molecular Biology Researches & Studies Institute, Assiut University, Assiut, 71526, Egypt.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundtRNA fragments (tRFs) are small non-coding RNAs generated from cleaved tRNA molecules, playing key roles in gene regulation and cellular processes. Produced by ribonucleases like angiogenin and Dicer, tRFs vary in length and function in gene silencing and stress responses. They interact with Argonaute proteins and affect mRNA levels, and are emerging as potential diagnostic and therapeutic targets for diseases such as cancer and neurodegenerative disorders. Given that the skin is the largest organ in mammals, it serves as an ideal model for studying development and various diseases. Therefore, this study investigates tRF expression in sheep skin tissues to understand their regulatory roles during growth and development.

resultsThis study analyzed skin tissue from five 1-month-old lambs and five 24-month-old adult Tan sheep using small RNA sequencing and proteomics. Raw sequencing data were filtered and aligned to identify various tsRNAs, while proteomic data were assessed for differential expression. Principal Component Analysis (PCA) revealed distinct separation between juvenile and adult samples based on tsRNA expression patterns, indicating intra-group similarity and inter-group differences. Differentially expressed tsRNAs were identified, with 19 highly expressed tsRNAs at 1 month of age. Proteomic screening identified 932 highly expressed and 835 lowly expressed proteins in the 1-month-old group, with functional enrichment highlighting immunity and inflammation pathways. Predictive analysis of tsRNA target genes intersected with 20 differentially expressed proteins involved in mitochondrial metabolism and stress response.

conclusionThis study reveals that tsRNAs significantly influence developmental and immune processes in sheep, with distinct expression patterns between juveniles and adults. Future research should validate these findings and further elucidate the functional mechanisms of tsRNA regulation.

Indexed as

Gene Expression Regulation, DevelopmentalRNA, Small UntranslatedRNA, TransferSkinAnimalsGene Expression ProfilingProteomicsSheepRNA, Small UntranslatedRNA, TransferImmuneSheeptRNAtsRNA

Identifiers

PMID39953408
PMCPMC11829391

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.