Evidence map›Paper›PMID 39953092›Full record

ArticleScientific reports2025

Exploring the potential mechanism of B-phycoerythrin on DSS-induced colitis and colitis-associated bone loss based on network pharmacology, molecular docking, and experimental validation.

Luming Deng, Zhenhui Feng, Xingyan Li, Lvhua Fan, Xia Wu, Samad Tavakoli, Yuzhen Zhu, Hua Ye, Kefeng Wu

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. From AI-AssistedPharmaceuticals (Basel, Switzerland) · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Luming Deng *School of Ocean and Tropical Medicine, Guangdong Medical University, Zhanjiang, 524023, China.
Zhenhui Feng *School of Ocean and Tropical Medicine, Guangdong Medical University, Zhanjiang, 524023, China.
Xingyan Li *School of Ocean and Tropical Medicine, Guangdong Medical University, Zhanjiang, 524023, China.
Lvhua FanSchool of Ocean and Tropical Medicine, Guangdong Medical University, Zhanjiang, 524023, China.
Xia WuSchool of Ocean and Tropical Medicine, Guangdong Medical University, Zhanjiang, 524023, China.
Samad TavakoliSchool of Ocean and Tropical Medicine, Guangdong Medical University, Zhanjiang, 524023, China.
Yuzhen ZhuSchool of Ocean and Tropical Medicine, Guangdong Medical University, Zhanjiang, 524023, China.
Hua YeThe Marine Biomedical Research Institute of Guangdong Zhanjiang, Zhanjiang, 524023, China. yehua@gdmu.edu.cn.
Kefeng WuSchool of Ocean and Tropical Medicine, Guangdong Medical University, Zhanjiang, 524023, China. winokhere@sina.com.

Funding

Administration of Traditional Chinese Medicine of Guangdong Province 20241160Fund of Southern Marine Science and Engineering Guangdong Laboratory (Zhanjiang) ZJW-2019-007Funds for PHD researchers of Guangdong Medical University in 2023 GDMUB2023018Guangdong Basic and Applied Basic Research Foundation 2024A1515011074Science and Technology Program of Guangdong Province 2019B090905011Special Funds for Economic Development of Marine Economy of Guangdong Province, China GDME-2018C011Special Science and Technology Innovation Project of Guangdong Province, China 2022A01207Zhanjiang Marine Young Talent Innovation Project 2023E0007
6 · The paper itself

Abstract

B-phycoerythrin (B-PE), a pigment protein, has found extensive applications in the food, pharmaceutical, and cosmetic industries. However, the effects and potential mechanisms of B-PE on colitis and colitis-associated bone loss remain unclear. Thus, the aim of this study was to investigate the pharmacological mechanisms of B-PE against colitis and colitis-associated bone loss using network pharmacology analysis, molecular docking, and experimental validation. Based on public databases, 99 common targets of B-PE against inflammatory bowel disease and osteoporosis were predicted. The protein-protein interaction network identified 16 core targets, including TNF, AKT1, EGFR, etc., as hub targets. Additionally, functional enrichment analyses and molecular docking results revealed that the PI3K/AKT signaling pathway may serve as a potential signaling pathway for B-PE in the treatment of colitis and colitis-associated bone loss. Furthermore, pharmacological experiments indicated that B-PE not only reversed the elevated expression of TNF-α, IL-1β, MMP9, and CXCL8a, and the reduced expression of ZO-1, E-cadherin, COL1A1, and RUNX2 in the DSS-induced colitis zebrafish model, but also enhanced the phosphorylation of PI3K and AKT, thereby mitigating inflammatory response and promoting osteogenesis. In conclusion, this study provides a theoretical basis for considering B-PE as a promising candidate for the treatment of colitis and colitis-associated bone loss.

Indexed as

ColitisAnimalsDextran SulfateDisease Models, AnimalHumansMolecular Docking SimulationNetwork PharmacologyPhosphatidylinositol 3-KinasesProtein Interaction MapsProto-Oncogene Proteins c-aktSignal TransductionZebrafishDextran SulfatePhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-aktB-phycoerythrinInflammatory bowel diseaseMolecular dockingNetwork pharmacologyOsteoporosisPI3K/AKT signaling pathway

Identifiers

PMID39953092
PMCPMC11828949

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.