Evidence map›Paper›PMID 39952707›Full record

ArticleMethods in enzymology2025

TGIRT-seq to profile tRNA-derived RNAs and associated RNA modifications.

Abigail Grace Johnston, Monima Anam, Anindya Dutta, Zhangli Su

Abstract read
In one paragraph

Article in Methods in enzymology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Abigail Grace JohnstonDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL, United States.
Monima AnamDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL, United States.
Anindya DuttaDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL, United States; O'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL, United States.
Zhangli SuDepartment of Genetics, University of Alabama at Birmingham, Birmingham, AL, United States; O'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL, United States. Electronic address: zsu@uab.edu.

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
Involvement of Noncanonical Short RNAs in Gene Repression through the RNA-Induced-Silencing ComplexR01GM146756 · NIGMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI DUTTA, ANINDYA · 2022 to 2025
$1.3M
The role of small RNA modifications in gliomaR00CA259526 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SU, ZHANGLI · 2023 to 2025
$708k
Training Program in Brain Tumor BiologyT32NS121721 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Anita Borton Hjelmeland · 2024 to 2026
$503k
NCI NIH HHS P30 CA013148NCI NIH HHS R00 CA259526NIGMS NIH HHS R01 GM146756NINDS NIH HHS T32 NS121721
6 · The paper itself

Abstract

RNA modifications are key regulators for RNA processes. tRNA-derived RNAs are small RNAs with size between 15 and 50 bases long that are processed from mature or precursor tRNAs. Despite their more recent discovery, tRNA-derived RNAs have been found to play regulatory roles in many cellular processes including gene silencing, protein synthesis, stress response, and transgenerational inheritance. Furthermore, tRNA-derived RNAs are highly abundant in bodily fluids, posing as potential biomarkers. A unique feature of tRNA-derived RNAs is that they are rich in RNA modifications. Many of the RNA modifications on tRNA-derived RNAs disrupt Watson-Crick base pairing and will thus stall reverse transcriptase, such as N

Indexed as

RNA Processing, Post-TranscriptionalRNA, TransferSequence Analysis, RNAAnimalsHumansRNA, TransferGenomicsNext-generational sequencingRNA modificationSmall RNATRNA-derived RNAs

Identifiers

PMID39952707
PMCPMC11890191

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.