Evidence map›Paper›PMID 39951468›Full record

ArticlePLoS biology2025

GitHub enables collaborative and reproducible laboratory research.

Katharine Y Chen, Maria Toro-Moreno, Arvind Rasi Subramaniam

Abstract read
In one paragraph

Article in PLoS biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Katharine Y ChenBasic Sciences Division and Computational Biology Section of the Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Maria Toro-MorenoBasic Sciences Division and Computational Biology Section of the Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.
Arvind Rasi SubramaniamBasic Sciences Division and Computational Biology Section of the Public Health Sciences Division, Fred Hutchinson Cancer Center, Seattle, Washington, United States of America.ORCID https://orcid.org/0000-0001-6145-4303

Funding

Unraveling microprotein biology with an evolutionary-immunological frameworkR01AT012826 · NCCIH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Alok Joglekar, Arvind Rasi Subramaniam · 2023 to 2026
$5.9M
Regulation of Protein Synthesis by Synonymous Codon UsageR35GM119835 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SUBRAMANIAM, ARVIND RASI · 2016 to 2025
$4.1M
NCCIH NIH HHS R01 AT012826NIGMS NIH HHS R35 GM119835
6 · The paper itself

Abstract

GitHub, a platform widely used in software development, offers a robust framework for documenting all activities of laboratory research projects. This Community Page highlights the benefits of, and provides guidance for, incorporating the GitHub ecosystem into "wet" lab workflows.

Indexed as

LaboratoriesSoftwareCooperative BehaviorHumansReproducibility of ResultsWorkflow

Identifiers

PMID39951468
PMCPMC11828340

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.