Evidence map›Paper›PMID 39949535›Full record

ArticleQuantitative biology (Beijing, China)2024

Comprehensive cross cancer analyses reveal mutational signature cancer specificity.

Rui Xin, Limin Jiang, Hui Yu, Fengyao Yan, Jijun Tang, Yan Guo

Abstract read
In one paragraph

Article in Quantitative biology (Beijing, China), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rui XinDepartment of Computer Science, University of South Carolina, Columbia, South Carolina, USA.
Limin JiangDepartment of Public Health and Sciences, Sylvester Comprehensive Cancer Center, University of Miami, Miami, Florida, USA.
Hui YuDepartment of Public Health and Sciences, Sylvester Comprehensive Cancer Center, University of Miami, Miami, Florida, USA.
Fengyao YanDepartment of Computer Science, University of South Carolina, Columbia, South Carolina, USA.
Jijun TangDepartment of Public Health and Sciences, Sylvester Comprehensive Cancer Center, University of Miami, Miami, Florida, USA.
Yan GuoDepartment of Public Health and Sciences, Sylvester Comprehensive Cancer Center, University of Miami, Miami, Florida, USA.

Funding

Tumor Biology Research ProgramP30CA240139 · NCI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI George S. Grills · 2019 to 2026
$24.1M
Mutational Signatures of a Combined Environmental Exposure: Arsenic and Ultraviolet RadiationR01ES030993 · NIEHS · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI HUDSON, LAURIE G, LIU, KE JIAN · 2020 to 2024
$2.5M
NCI NIH HHS P30 CA240139NIEHS NIH HHS R01 ES030993
6 · The paper itself

Abstract

Mutational signatures refer to distinct patterns of DNA mutations that occur in a specific context or under certain conditions. It is a powerful tool to describe cancer etiology. We conducted a study to show cancer heterogeneity and cancer specificity from the aspect of mutational signatures through collinearity analysis and machine learning techniques. Through thorough training and independent validation, our results show that while the majority of the mutational signatures are distinct, similarities between certain mutational signature pairs can be observed through both mutation patterns and mutational signature abundance. The observation can potentially assist to determine the etiology of yet elusive mutational signatures. Further analysis using machine learning approaches demonstrated moderate mutational signature cancer specificity. Skin cancer among all cancer types demonstrated the strongest mutational signature specificity.

Indexed as

cancer specificitycollinearity analysisDNA mutational signaturesmachine learning

Identifiers

PMID39949535
PMCPMC11824353

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.