Evidence map›Paper›PMID 39948633›Full record

ArticleGenome biology2025

Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles.

Jacob Matthew Schreiber, Carles A Boix, Jin Wook Lee, Hongyang Li, Yuanfang Guan, Chun-Chieh Chang, Jen-Chien Chang, Alex Hawkins-Hooker, Bernhard Schölkopf, Gabriele Schweikert and 33 more

Abstract readPublished Erratum
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

43 authors.

Jacob Matthew Schreiber *Department of Genetics, Stanford University, Stanford, CA, USA. jmschreiber91@gmail.com.
Carles A Boix *Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Jin Wook LeeDepartment of Genetics, Stanford University, Stanford, CA, USA.
Hongyang LiDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.
Yuanfang GuanDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.
Chun-Chieh ChangDepartment of Research and Development, DeepSeq.AI, San Francisco, CA, USA.
Jen-Chien ChangRIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Alex Hawkins-HookerDepartment of Empirical Inference, Max Planck Institute for Intelligent Systems, Stuttgart, Germany.
Bernhard SchölkopfDepartment of Empirical Inference, Max Planck Institute for Intelligent Systems, Stuttgart, Germany.
Gabriele SchweikertSchool of Life Sciences, University of Dundee, Dundee, UK.
Mateo Rojas CarullaDepartment of Empirical Inference, Max Planck Institute for Intelligent Systems, Stuttgart, Germany.
Arif CanakogluDepartment of Electronics, Information and Bioengineering, Politecnico Di Milano, Milan, Italy.
Francesco GuzzoDepartment of Electronics, Information and Bioengineering, Politecnico Di Milano, Milan, Italy.
Luca NanniDepartment of Computational Biology, University of Lausanne, Lausanne, Switzerland.
Marco MasseroliDepartment of Electronics, Information and Bioengineering, Politecnico Di Milano, Milan, Italy.
Mark James CarmanDepartment of Electronics, Information and Bioengineering, Politecnico Di Milano, Milan, Italy.
Pietro PinoliDepartment of Electronics, Information and Bioengineering, Politecnico Di Milano, Milan, Italy.
Chenyang HongDepartment of Computer Science and Engineering, The Chinese University of Hong Kong, Sha Tin, Hong Kong.
Kevin Y YipSanford Burnham Prebys Medical Discovery Institute, San Diego, CA, USA.
Jefrey P SpenceDepartment of Genetics, Stanford University, Stanford, CA, USA.
Sanjit Singh BatraDepartment of Electrical Engineering and Computer Sciences, University of California, Berkeley, Berkeley, CA, USA.
Yun S SongDepartment of Electrical Engineering and Computer Sciences, University of California, Berkeley, Berkeley, CA, USA.
Shaun MahonyDepartment of Biochemistry & Molecular Biology, Center for Eukaryotic Gene Regulation, Pennsylvania State University, University Park, PA, USA.
Zheng ZhangDepartment of Statistics, Pennsylvania State University, University Park, PA, USA.
Wuwei TanDepartment of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA.
Yang ShenDepartment of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA.
Yuanfei SunDepartment of Electrical and Computer Engineering, Texas A&M University, College Station, TX, USA.
Minyi ShiDepartment of Genetics, Stanford University, Stanford, CA, USA.
Jessika AdrianDepartment of Genetics, Stanford University, Stanford, CA, USA.
Richard S SandstromAltius Institute, Seattle, WA, USA.
Nina P FarrellEpigenomics Program, The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Jessica M HalowAltius Institute, Seattle, WA, USA.
Kristen LeeAltius Institute, Seattle, WA, USA.
Lixia JiangDepartment of Genetics, Stanford University, Stanford, CA, USA.
Xinqiong YangDepartment of Genetics, Stanford University, Stanford, CA, USA.
Charles B EpsteinEpigenomics Program, The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
J Seth StrattanDepartment of Genetics, Stanford University, Stanford, CA, USA.
Bradley E BernsteinEpigenomics Program, The Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Michael P SnyderDepartment of Genetics, Stanford University, Stanford, CA, USA.
Manolis KellisComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
William S NobleDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Anshul Bharat KundajeDepartment of Genetics, Stanford University, Stanford, CA, USA.
ENCODE Imputation Challenge Participants

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Identifiers

PMID39948633
PMCPMC11827186

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.