ArticleJournal of molecular biology2025
ModelArchive: A Deposition Database for Computational Macromolecular Structural Models.
Article in Journal of molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
39 citing papers in PubMed.
- 3DSeqCheck: A Web-based Tool for Verifying Sequence Consistency Between a 3D Structure File and the Corresponding UniProt Entry.Journal of molecular biology · 2026Article
- IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank.Journal of molecular biology · 2026Article
- ModelCIF Update: Supporting Emerging Classes of Computational Macromolecular Models.Journal of molecular biology · 2026Article
- Dissecting Structural and Functional Determinants of Microtubules Stabilization through Guided Chemical Modulation.Journal of medicinal chemistry · 2026Article
- A ubiquitin chain-feeding mechanism for BRCA1-A.Nature communications · 2026Article
- RCSB protein data Bank: Next-generation advanced search for exploration of experimental structures and computed structure models.Protein science : a publication of the Protein Society · 2026Article
- DirectContacts2: a wiring diagram of human physical protein interactions.Nature communications · 2026Article
- HThe FEBS journal · 2026Article
- RNF13 is a previously undescribed interactor of iduronate 2-sulfatase that modifies its glycosylation and maturation.The FEBS journal · 2026Article
- Raw defines a TIR-fold cADPR hydrolase cooperating with dSarm in development and axon degeneration.Cell communication and signaling : CCS · 2026Article
- Diffusing caveolin-1 scaffolds regulate mechanosignalling.Nature cell biology · 2026Article
- Article
- Evaluating generalization in protein-ligand cofolding methods.Nature structural & molecular biology · 2026Article
- AlphaFold-driven discovery of oxysterol-binding protein-related protein-phosphoinositide 3-, 4-, and 5-phosphatase interactions using new generation confidence scores.Protein science : a publication of the Protein Society · 2026Article
- Bromodomain dimers: A case study of BRD4 and family-wide AlphaFold predictions.Structural dynamics (Melville, N.Y.) · 2026Article
- Conformational equilibria in the activation of cystine-knot hormone receptors.Proceedings of the National Academy of Sciences of the United States of America · 2026Article
- MolViewStories: Interactive molecular storytelling.Protein science : a publication of the Protein Society · 2026Article
- Teleost-specific ictacalcins exhibit similar structural organization, cation-dependent activation, and transcriptional regulation as human S100 proteins.The FEBS journal · 2026Article
- Multi-scale structural similarity embedding search across entire proteomes.Bioinformatics (Oxford, England) · 2026Article
- RAD51C-XRCC3 complex regulates FANCM-mediated R-loop resolution to safeguard genome integrity.Science advances · 2026Article
Corrections and comments
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Authors and funding
7 authors.
Funding
Abstract
A wide range of applications in life science research benefit from the availability of three-dimensional structures of biological macromolecules as they provide valuable insights into their molecular function. Recent advances in structure prediction techniques have made it possible to generate high quality computational macromolecular structural models for almost all known proteins. In this context, ModelArchive (https://modelarchive.org/) serves as a deposition database for computational models, complementing the Protein Data Bank (PDB) and PDB-IHM, which require experimental data, and specialised databases such as the AlphaFold DB. ModelArchive contains over 600,000 models contributed by researchers using a variety of modelling techniques. It supports single biological macromolecules and complexes, including any combination of polymers and small molecules. Each deposited model can be referenced in manuscripts using an immutable accession code provided by ModelArchive. Depositors are required to provide a minimal set of information about the modelling process and the expected accuracy of the resulting model, enabling scientific reproducibility and maximising the potential reuse of the models. The vast majority of models in ModelArchive use the ModelCIF format which includes coordinates and metadata, allows for programmatic validation of the models, and makes the models interoperable with structures obtained from other sources such as the PDB. The ModelArchive web service provides access to the models and search queries. Model findability is also provided in external services either through APIs or by importing data from ModelArchive.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.