Evidence map›Paper›PMID 39946430›Full record

ArticlePloS one2025

Genetic diversity and population structure analysis of Forsythia ovata, a Korean endemic, based on genotyping-by-sequencing.

Yoo-Bin Lee, Soonku So, Yoo-Jung Park, Halam Kang, Ha-Rim Lee, Jae-Hyeong Kim, Ho-Kwon Gwak, Kyung-Ah Kim, Kyeong-Sik Cheon

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Article in PloS one, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

9 authors.

Yoo-Bin LeeDepartment of Biological Science, Sangji University, Wonju, South Korea.
Soonku SoKorea National Park Research Institute, Wonju, Korea.
Yoo-Jung ParkDepartment of Biological Science, Sangji University, Wonju, South Korea.
Halam KangDepartment of Biological Science, Sangji University, Wonju, South Korea.
Ha-Rim LeeDepartment of Biological Science, Sangji University, Wonju, South Korea.
Jae-Hyeong KimDepartment of Biological Science, Sangji University, Wonju, South Korea.
Ho-Kwon GwakDepartment of Biological Science, Sangji University, Wonju, South Korea.
Kyung-Ah KimDepartment of Biological Sciences, Kangwon National University, Chuncheon, South Korea.
Kyeong-Sik CheonDepartment of Biological Science, Sangji University, Wonju, South Korea.ORCID 0000-0002-2182-7379

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The perennial shrub Forsythia ovata Nakai, native to the Korean Peninsula, has a highly restricted natural habitat, occurring only in a small area within the Baekdudaegan Mountain Range located in Gangwon-do Province. These characteristics give this species high conservation value, but there is a significant lack of genetic concerning about its populations for conservation purposes. In this study, we utilized genotyping-by-sequencing (GBS) to examine the genetic diversity and population structure of F. ovata. Our analysis including 5,017 single nucleotide polymorphisms (SNPs) from 72 individuals, representing nine distinct populations. The results revealed a mean expected heterozygosity (He) of 0.212, indicating a moderate level of genetic diversity within the species. Additionally, a relatively low levels of genetic differentiation (FST) and high gene flow (Nm) between populations were detected. The analysis of molecular variance (AMOVA) results indicated that most genetic variation occurred within individuals, accounting for 86.66% of the total variance. In contrast, only 6.90% and 6.44% of the molecular variance was attributed to differences among individuals and between populations, respectively. Considering the results of Bayesian structure analysis on the basis of ∆ K, principal coordinate analysis and phylogenetic analysis, we propose two management units for conservation. In addition, given the current conditions faced by F. ovata, both in situ and ex situ conservation should be considered for some populations (SG and BD).

Indexed as

Genetic VariationBayes TheoremGene FlowGenetics, PopulationGenotypeGenotyping TechniquesPhylogenyPolymorphism, Single NucleotideRepublic of KoreaSequence Analysis, DNA

Identifiers

PMID39946430
PMCPMC11825039

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.