Evidence map›Paper›PMID 39943039›Full record

ArticlePlants (Basel, Switzerland)2025

A Gemini Virus-Derived Autonomously Replicating System for HDR-Mediated Genome Editing of the

Bhabesh Borphukan, Muslima Khatun, Dhirendra Fartyal, Donald James, Malireddy K Reddy

Abstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Genome Editing Approaches in Flax (International journal of molecular sciences · 2026
    Review
  4. Methods Established forPlants (Basel, Switzerland) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bhabesh BorphukanDepartment of Crop and Soil Sciences, Washington State University, Pullman, WA 99163, USA.
Muslima KhatunMolecular Biotechnology Division, National Institute of Biotechnology, Dhaka 1349, Bangladesh.
Dhirendra FartyalPlant Nutrition Division, INRES, University of Bonn, 53113 Bonn, Germany.
Donald JamesDepartment of Biotechnology, Forest Genetics and Biotechnology Division, Kerala Forest Research Institute, Thrissur 680653, India.
Malireddy K ReddyCrop Improvement Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.ORCID 0000-0001-7217-5246

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR/Cas9-mediated homology-directed repair (HDR) is a powerful tool for precise genome editing in plants, but its efficiency remains low, particularly for targeted amino acid substitutions or gene knock-ins. Successful HDR requires the simultaneous presence of Cas9, guide RNA, and a repair template (RT) in the same cell nucleus. Among these, the timely availability of the RT at the double-strand break (DSB) site is a critical bottleneck. To address this, we developed a sequential transformation strategy incorporating a deconstructed wheat dwarf virus (dWDV)-based autonomously replicating delivery system, effectively simplifying the process into a two-component system. Using this approach, we successfully achieved the targeted editing of the

Indexed as

CRISPR/Cas9genome editinghomology directed repairOsEPSPS geneviral repliconwheat dwarf virus

Identifiers

PMID39943039
PMCPMC11821261

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.