Evidence map›Paper›PMID 39940950›Full record

ArticleInternational journal of molecular sciences2025

Effects of Cell Seeding Density, Extracellular Matrix Composition, and Geometry on Yes-Associated Protein Translocation in Corneal Fibroblasts.

Divya Subramanian, Nathaniel S Tjahjono, Satweka Nammi, Miguel Miron-Mendoza, Victor D Varner, W Matthew Petroll, David W Schmidtke

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Divya SubramanianDepartment of Bioengineering, University of Texas at Dallas, Richardson, TX 75080, USA.
Nathaniel S TjahjonoDepartment of Bioengineering, University of Texas at Dallas, Richardson, TX 75080, USA.ORCID 0000-0003-2485-6498
Satweka NammiDepartment of Bioengineering, University of Texas at Dallas, Richardson, TX 75080, USA.
Miguel Miron-MendozaDepartment of Ophthalmology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Victor D VarnerDepartment of Bioengineering, University of Texas at Dallas, Richardson, TX 75080, USA.
W Matthew PetrollDepartment of Ophthalmology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.ORCID 0000-0003-0795-4539
David W SchmidtkeDepartment of Bioengineering, University of Texas at Dallas, Richardson, TX 75080, USA.ORCID 0000-0001-6404-318X

Funding

Stem Cell, Organoid and Cell Phenotyping ModuleP30EY030413 · NEI · UT SOUTHWESTERN MEDICAL CENTER · PI W MATTHEW PETROLL · 2019 to 2026
$5.9M
Regulation of Corneal Keratocyte Differentiation through the Integration of Biochemical, Biomechanical and Topographic CuesR01EY030190 · NEI · UNIVERSITY OF TEXAS DALLAS · PI SCHMIDTKE, DAVID W · 2019 to 2024
$1.9M
International Foundation for Ethical Research Graduate FellowshipNEI NIH HHS P30 EY030413NEI NIH HHS R01 EY030190NIH HHS P30 EY030413NIH HHS R01 EY030190Research to Prevent Blindness, Inc Challenge Grant
6 · The paper itself

Abstract

Corneal fibroblasts are central to normal and abnormal wound healing in the cornea. During the wound healing process, several biochemical and biophysical signals that are present in the extracellular matrix (ECM) play critical roles in regulating corneal fibroblast behavior. The translocation and activation of Yes-associated protein (YAP)-a main transcriptional factor in the Hippo signaling pathway-is one example of mechanotransduction involving these signals. However, how corneal fibroblasts integrate these simultaneous cues is unknown. In this study, we utilized well-defined micropatterns of aligned collagen fibrils and other ECM proteins to explore the effects of cell density, topography, geometric confinement, and ECM composition on the translocation of YAP in corneal fibroblasts. We observed that when human corneal fibroblasts (HTKs) were confined to narrow micropatterns (50 μm and 100 μm) of proteins, there was a high degree of cell alignment irrespective of cell seeding density. However, the location of YAP was dependent upon the cell seeding density, ECM composition, and topography. YAP was more nuclear-localized on substrates coated with aligned collagen fibrils or fibronectin as compared to substrates coated with monomeric collagen, random collagen fibrils, or poly-L-Lysine. In addition, we also observed that YAP nuclear localization was significantly reduced when HTKs were cultured on aligned collagen fibrils, monomeric collagen, or fibronectin in the presence of monoclonal blocking antibodies against α

Indexed as

Adaptor Proteins, Signal TransducingCorneaExtracellular MatrixFibroblastsCell CountCells, CulturedCollagenHumansMechanotransduction, CellularProtein TransportTranscription FactorsYAP-Signaling ProteinsAdaptor Proteins, Signal TransducingCollagenTranscription FactorsYAP1 protein, humanYAP-Signaling Proteinscollagen fibrilsconfinementcorneacorneal fibroblastsmicropatternstopographyYAP

Identifiers

PMID39940950
PMCPMC11818043

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.