Evidence map›Paper›PMID 39940904›Full record

ArticleInternational journal of molecular sciences2025

A Joint Analysis of RNA-DNA and DNA-DNA Interactomes Reveals Their Strong Association.

Dmitry S Zvezdin, Artyom A Tyukaev, Anastasia A Zharikova, Andrey A Mironov

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Dmitry S ZvezdinRSC Bioinformatics, Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Bolshoy Karetny Per. 19, 127051 Moscow, Russia.ORCID 0009-0001-9305-6315
Artyom A TyukaevFaculty of Bioengineering and Bioinformatics, Lomonosov Moscow State University, 1-7-3 Leninskie Gory, 119991 Moscow, Russia.ORCID 0009-0003-4339-2032
Anastasia A ZharikovaRSC Bioinformatics, Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Bolshoy Karetny Per. 19, 127051 Moscow, Russia.ORCID 0000-0003-0723-0493
Andrey A MironovRSC Bioinformatics, Kharkevich Institute for Information Transmission Problems, Russian Academy of Sciences, Bolshoy Karetny Per. 19, 127051 Moscow, Russia.ORCID 0000-0003-2888-8358

Funding

Russian Science Foundation 23-14-00136
6 · The paper itself

Abstract

At the moment, many non-coding RNAs that perform a variety of functions in the regulation of chromatin processes are known. An increasing number of protocols allow researchers to study RNA-DNA interactions and shed light on new aspects of the RNA-chromatin interactome. The Hi-C protocol, which enables the study of chromatin's three-dimensional organization, has already led to numerous discoveries in the field of genome 3D organization. We conducted a comprehensive joint analysis of the RNA-DNA interactome and chromatin structure across different human and mouse cell lines. We show that these two phenomena are closely related in many respects, with the nature of this relationship being both tissue specific and conserved across humans and mice.

Indexed as

ChromatinDNARNAAnimalsCell LineHumansMiceChromatinDNARNAchromatinHi-Cnon-coding RNAsRNA-DNA interactome

Identifiers

PMID39940904
PMCPMC11817408

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.