Evidence map›Paper›PMID 39939790›Full record

ArticleNature2025

MorPhiC Consortium: towards functional characterization of all human genes.

Mazhar Adli, Laralynne Przybyla, Tony Burdett, Paul W Burridge, Pilar Cacheiro, Howard Y Chang, Jesse M Engreitz, Luke A Gilbert, William J Greenleaf, Li Hsu and 20 more

Abstract read
In one paragraph

Article in Nature, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Epigenetic editing: from concept to clinic.Nature reviews. Drug discovery · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors.

Mazhar Adli *Robert H. Lurie Comprehensive Cancer Center, Department of Obstetrics and Gynecology, Northwestern University, Feinberg School of Medicine, Chicago, IL, USA. adli@northwestern.edu.ORCID 0000-0003-4740-9594
Laralynne Przybyla *Department of Biochemistry and Biophysics, University of California, San Francisco, CA, USA.
Tony BurdettOmics Section, European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, UK.ORCID 0000-0002-2513-5396
Paul W BurridgeDepartment of Pharmacology, Center for Pharmacogenomics, Northwestern University, Feinberg School of Medicine, Evanston, IL, USA.ORCID 0000-0001-9616-0006
Pilar CacheiroWilliam Harvey Research Institute, Clinical Pharmacology and Precision Medicine, Queen Mary University of London, London, UK.
Howard Y ChangDepartment of Dermatology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-9459-4393
Jesse M EngreitzDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID 0000-0002-5754-1719
Luke A GilbertDepartment of Urology, University of California, San Francisco, CA, USA.ORCID 0000-0001-5854-0825
William J GreenleafDepartment of Genetics, Stanford University, Stanford, CA, USA.ORCID 0000-0003-1409-3095
Li HsuDepartment of Biostatistics, Public Health Sciences, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0001-8168-4712
Danwei HuangfuDevelopmental Biology Program, Sloan Kettering Institute, New York, NY, USA.ORCID 0000-0002-1145-6199
Ling-Hong HungSchool of Engineering and Technology, University of Washington Tacoma, Tacoma, WA, USA.
Anshul KundajeDepartments of Genetics and Computer Science, Stanford University, Stanford, CA, USA.ORCID 0000-0003-3084-2287
Sheng LiThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.
Helen ParkinsonKnowledge Management Section, European Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, UK.
Xiaojie QiuBasic Science and Engineering (BASE) Initiative, Stanford University, Stanford, CA, USA.
Paul RobsonThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.ORCID 0000-0002-0191-3958
Stephan C SchürerMolecular and Cellular Pharmacology; Sylvester Comprehensive Cancer Center, University of Miami, Coral Gables, FL, USA.
Ali ShojaieDepartment of Biostatistics, University of Washington, Seattle, WA, USA.
William C SkarnesThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.
Damian SmedleyWilliam Harvey Research Institute, Clinical Pharmacology and Precision Medicine, Queen Mary University of London, London, UK.ORCID 0000-0002-5836-9850
Lorenz StuderDevelopmental Biology Program, Sloan Kettering Institute, New York, NY, USA.ORCID 0000-0003-0741-7987
Wei SunDepartment of Biostatistics, Public Health Sciences, Fred Hutchinson Cancer Center, Seattle, WA, USA.ORCID 0000-0002-6350-1107
Dušica VidovićMolecular and Cellular Pharmacology; Sylvester Comprehensive Cancer Center, University of Miami, Coral Gables, FL, USA.ORCID 0000-0001-9798-2108
Thomas VierbuchenDevelopmental Biology Program, Sloan Kettering Institute, New York, NY, USA.
Brian S WhiteThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.
Ka Yee YeungSchool of Engineering and Technology, University of Washington Tacoma, Tacoma, WA, USA.ORCID 0000-0002-1754-7577
Feng YueDepartment of Biochemistry and Molecular Genetics, Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Feinberg School of Medicine, Chicago, IL, USA.ORCID 0000-0002-7954-5462
Ting ZhouDevelopmental Biology Program, Sloan Kettering Institute, New York, NY, USA.ORCID 0000-0003-1423-1507
MorPhiC Consortium

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
JAX MorPhiC Data Production CenterUM1HG012651 · NHGRI · JACKSON LABORATORY · PI Paul Robson, William Carl Skarnes · 2022 to 2026
$9.6M
Center for scalable knockout and multimodal phenotyping in genetically diverse human genomesUM1HG012654 · NHGRI · SLOAN-KETTERING INST CAN RESEARCH · PI Danwei Huangfu, LORENZ P. STUDER · 2022 to 2026
$9.1M
Spatial multiomic mapping of gene function with CRISPRoffUM1HG012660 · NHGRI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Luke Gilbert · 2022 to 2026
$8.2M
Molecular and cellular characterization of essential human genes.UM1HG012649 · NHGRI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Mazhar Adli, Paul W. Burridge · 2022 to 2026
$8.1M
MorPhiC Data Resource and Administrative Coordinating CenterU24HG012674 · NHGRI · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Helen Elizabeth Parkinson, Stephan C Schurer · 2022 to 2026
$6.9M
Statistical Methods for Inferring Gene-Phenotype Associations Using Omic Data from Gene Knockout and Human Phenotype StudiesU01HG013177 · NHGRI · FRED HUTCHINSON CANCER CENTER · PI Li Hsu, ALI SHOJAIE · 2023 to 2026
$2.2M
Chemo-mediated transcriptional reprogramming in ovarian cancerR01CA267544 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ADLI, MAZHAR · 2022 to 2025
$2.2M
Statistical Genetics and Genomics for Epidemiologic ResearchR01CA222833 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SUN, WEI · 2018 to 2022
$2.2M
Novel Statistical Inference for Biomedical Big DataR01GM133848 · NIGMS · UNIVERSITY OF WASHINGTON · PI SHOJAIE, ALI · 2020 to 2023
$1.7M
NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA222833NCI NIH HHS R01 CA267544NHGRI NIH HHS U01 HG013177NHGRI NIH HHS U24 HG012674NHGRI NIH HHS UM1 HG012649NHGRI NIH HHS UM1 HG012651NHGRI NIH HHS UM1 HG012654NHGRI NIH HHS UM1 HG012660NIGMS NIH HHS R01 GM133848
6 · The paper itself

Abstract

Recent advances in functional genomics and human cellular models have substantially enhanced our understanding of the structure and regulation of the human genome. However, our grasp of the molecular functions of human genes remains incomplete and biased towards specific gene classes. The Molecular Phenotypes of Null Alleles in Cells (MorPhiC) Consortium aims to address this gap by creating a comprehensive catalogue of the molecular and cellular phenotypes associated with null alleles of all human genes using in vitro multicellular systems. In this Perspective, we present the strategic vision of the MorPhiC Consortium and discuss various strategies for generating null alleles, as well as the challenges involved. We describe the cellular models and scalable phenotypic readouts that will be used in the consortium's initial phase, focusing on 1,000 protein-coding genes. The resulting molecular and cellular data will be compiled into a catalogue of null-allele phenotypes. The methodologies developed in this phase will establish best practices for extending these approaches to all human protein-coding genes. The resources generated-including engineered cell lines, plasmids, phenotypic data, genomic information and computational tools-will be made available to the broader research community to facilitate deeper insights into human gene functions.

Indexed as

Genome, HumanGenomicsAllelesHumansPhenotype

Identifiers

PMID39939790
PMCPMC12088665

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.