Evidence map›Paper›PMID 39939548›Full record

ArticleNature biomedical engineering2025

A gut-on-a-chip incorporating human faecal samples and peristalsis predicts responses to immune checkpoint inhibitors for melanoma.

Mattia Ballerini, Serena Galiè, Punit Tyagi, Carlotta Catozzi, Hariam Raji, Amir Nabinejad, Angeli D G Macandog, Alessandro Cordiale, Bianca Ionela Slivinschi, Karol K Kugiejko and 12 more

Abstract read
In one paragraph

Article in Nature biomedical engineering, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  5. Organoids-on-a-Chip: An Integrating New Technology for Drug Development.International journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Mattia BalleriniDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.ORCID http://orcid.org/0009-0009-1934-9644
Serena GalièDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.
Punit TyagiDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.
Carlotta CatozziDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.
Hariam RajiMechanisms and Therapy of Genetic Brain Diseases, Institut Imagine, INSERM UMR1163, Université Paris Cité, Paris, France.
Amir NabinejadDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.ORCID http://orcid.org/0000-0003-3276-1368
Angeli D G MacandogDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.
Alessandro CordialeDepartment of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy.
Bianca Ionela SlivinschiMechanisms and Therapy of Genetic Brain Diseases, Institut Imagine, INSERM UMR1163, Université Paris Cité, Paris, France.
Karol K KugiejkoDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.
Martina FreisaDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.
Paola OcchettaDepartment of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy.ORCID http://orcid.org/0000-0002-5758-2019
Jennifer A WargoDepartment of Surgical Oncology, Division of Surgery and Department of Genomic Medicine, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Pier F FerrucciDipartimento di Oncologia Interpresidio Gruppo Multimedica IRCCS, Milan, Italy.
Emilia CocorocchioDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.
Nicola SegataDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.ORCID http://orcid.org/0000-0002-1583-5794
Andrea VignatiDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy.
Andrey MorgunCollege of Pharmacy, Oregon State University, Corvallis, OR, USA.
Michela DeleidiMechanisms and Therapy of Genetic Brain Diseases, Institut Imagine, INSERM UMR1163, Université Paris Cité, Paris, France.
Teresa ManzoDepartment of Molecular Biotechnology and Health Sciences, University of Torino, Turin, Italy.ORCID http://orcid.org/0000-0001-8552-3625
Marco RasponiDepartment of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy.ORCID http://orcid.org/0000-0002-2904-8652
Luigi NeziDepartment of Experimental Oncology, Istituto Europeo di Oncologia - IRCCS (IEO), Milan, Italy. luigi.nezi@ieo.it.ORCID http://orcid.org/0000-0002-4670-7656

Funding

Mucosal Macrophages and Tertiary Lymphoid Structures in IBDR01DK107603 · NIDDK · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI BOGUNOVIC, MILENA · 2016 to 2025
$4.0M
Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) IG 26406Associazione Italiana per la Ricerca sul Cancro (Italian Association for Cancer Research) StartUp Grant 21474EC | Horizon 2020 Framework Programme (EU Framework Programme for Research and Innovation H2020) 860715NIDDK NIH HHS R01 DK107603Worldwide Cancer Research 22-0402
6 · The paper itself

Abstract

Patient responses to immune checkpoint inhibitors can be influenced by the gastrointestinal microbiome. Mouse models can be used to study microbiome-host crosstalk, yet their utility is constrained by substantial anatomical, functional, immunological and microbial differences between mice and humans. Here we show that a gut-on-a-chip system mimicking the architecture and functionality of the human intestine by including faecal microbiome and peristaltic-like movements recapitulates microbiome-host interactions and predicts responses to immune checkpoint inhibitors in patients with melanoma. The system is composed of a vascular channel seeded with human microvascular endothelial cells and an intestinal channel with intestinal organoids derived from human induced pluripotent stem cells, with the two channels separated by a collagen matrix. By incorporating faecal samples from patients with melanoma into the intestinal channel and by performing multiomic analyses, we uncovered epithelium-specific biomarkers and microbial factors that correlate with clinical outcomes in patients with melanoma and that the microbiome of non-responders has a reduced ability to buffer cellular stress and self-renew. The gut-on-a-chip model may help identify prognostic biomarkers and therapeutic targets.

Indexed as

FecesImmune Checkpoint InhibitorsLab-On-A-Chip DevicesMelanomaPeristalsisAnimalsEndothelial CellsGastrointestinal MicrobiomeHumansInduced Pluripotent Stem CellsMiceOrganoidsImmune Checkpoint Inhibitors

Identifiers

PMID39939548
PMCPMC12176660

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.