Evidence map›Paper›PMID 39939516›Full record

ArticleWorld journal of microbiology & biotechnology2025

Gene knockout studies of Dps protein reveals a novel role for DNA-binding protein in maintaining outer membrane permeability.

Indu Pant, Akhilesh A Potnis, Ravindranath Shashidhar

Erratum issuedAbstract read
In one paragraph

Article in World journal of microbiology & biotechnology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors.

Indu PantFood Technology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, India.
Akhilesh A PotnisMolecular Biology Division, Bhabha Atomic Research Centre, Mumbai, India.
Ravindranath ShashidharFood Technology Division, Bhabha Atomic Research Centre, Trombay, Mumbai, India. shashi@barc.gov.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA-binding proteins like Dps are crucial for bacterial stress physiology. This study investigated the unexpected role of Dps protein in maintaining outer membrane integrity of Salmonella Typhimurium. We observed that a Δdps mutant displayed increased sensitivity to glycopeptide antibiotics (vancomycin, nisin), which are ineffective against Gram-negative bacteria due to their thick outer membrane (OM). Furthermore, the Δdps mutant exhibited susceptibility to membrane-disrupting agents like detergents (deoxycholate, SDS) and phages. The perforation was observed in OM after the treatment of vancomycin using atomic force microscopy. Notably, this sensitivity was rescued by supplementing the media with calcium and magnesium cations. These findings suggest a novel function for Dps in maintaining outer membrane permeability. We propose two potential mechanisms: 1) Dps might directly localize to the outer membrane 2) Dps might regulate genes responsible for lipopolysaccharide synthesis or outer membrane proteins, key components of outer membrane. This study highlights a previously unknown role for Dps beyond DNA binding and warrants further investigation into the precise mechanism by which it influences outer membrane integrity in Salmonella.

Indexed as

Bacterial Outer MembraneCell Membrane PermeabilityDNA-Binding Proteins1-NaphthylamineAnti-Bacterial AgentsBacterial ProteinsBacteriophagesGene Knockout TechniquesGenetic Complementation TestMicroscopy, Atomic ForceNisinSalmonella typhimuriumSequence DeletionTranscriptomeVancomycin1-NaphthylamineAnti-Bacterial AgentsBacterial ProteinsDNA-Binding ProteinsDPS protein, BacteriaNisinN-phenyl-1-naphthylamineVancomycinNisin. Atomic force microscopyNucleoid associated proteinOuter membranePhage sensitivityS. TyphimuriumVancomycin

Identifiers

PMID39939516
PMCPMC11821673

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.