Evidence map›Paper›PMID 39939320›Full record

ArticleNature communications2025

Oligonucleotide subsets selection by single nucleotide resolution barcode identification.

Woojin Kim, Mingweon Chon, Yoonhae Koh, Hansol Choi, Eunjin Choi, Hyewon Park, Yushin Jung, Taehoon Ryu, Sunghoon Kwon, Yeongjae Choi

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Woojin Kim *School of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, Republic of Korea.ORCID http://orcid.org/0009-0007-1732-7236
Mingweon Chon *Department of Electrical and Computer Engineering, Seoul National University, Seoul, Republic of Korea.ORCID http://orcid.org/0009-0000-2553-1973
Yoonhae Koh *School of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, Republic of Korea.ORCID http://orcid.org/0009-0008-0254-0541
Hansol Choi *Department of Electrical and Computer Engineering, Seoul National University, Seoul, Republic of Korea.
Eunjin ChoiSchool of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, Republic of Korea.
Hyewon ParkATG Lifetech Inc., Seoul, Republic of Korea.
Yushin JungATG Lifetech Inc., Seoul, Republic of Korea.
Taehoon RyuATG Lifetech Inc., Seoul, Republic of Korea.ORCID http://orcid.org/0000-0003-4634-5189
Sunghoon KwonDepartment of Electrical and Computer Engineering, Seoul National University, Seoul, Republic of Korea. skwon@snu.ac.kr.ORCID http://orcid.org/0000-0003-3514-1738
Yeongjae ChoiSchool of Materials Science and Engineering, Gwangju Institute of Science and Technology (GIST), Gwangju, Republic of Korea. yeongjae@gist.ac.kr.ORCID http://orcid.org/0000-0003-4868-6411

Funding

National Research Foundation of Korea (NRF) NRF-2022M3C1A3081366National Research Foundation of Korea (NRF) RS-2023-00302766National Research Foundation of Korea (NRF) RS-2024-00440370
6 · The paper itself

Abstract

Effective subset selection from complex oligonucleotide libraries is crucial for genomics, synthetic biology, and DNA data storage. The polymerase chain reaction, foundational for amplifying target subsets is limited by primer design and length for specificity, which constrains the scalability of oligo libraries and increases the synthesis burden for primers. We introduce an oligo subset selection methodology that utilizes sequence-specific cyclic nucleotide synthesis and blocking of the template oligos. This approach eliminates the need for primers for selective hybridization and enables the encoding and selection of hundreds of subsets with barcode lengths of fewer than five nucleotides. Moreover, cyclic selection enables a hierarchical data structure in the oligo library, enhancing the programmability. This advancement offers a scalable and cost-effective solution for handling complex oligo libraries.

Indexed as

DNA Barcoding, TaxonomicNucleotidesOligonucleotidesDNA PrimersGene LibraryPolymerase Chain ReactionDNA PrimersNucleotidesOligonucleotides

Identifiers

PMID39939320
PMCPMC11821832

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.