Evidence map›Paper›PMID 39939291›Full record

ArticleChembiochem : a European journal of chemical biology2025

Identification and Characterization of a Novel d-Branched-Chain Amino Acids Importer from Lactobacillus fermentum.

Koichiro Aoki, Yuta Mutaguchi, Hisashi Hemmi, Tohru Yoshimura, Tomokazu Ito

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Enhanced isoprenoid production inBiochemistry and biophysics reports · 2025
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Koichiro AokiDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furou-chou, Chikusa, Nagoya, Aichi, 464-8601, Japan.
Yuta MutaguchiDepartment of Biotechnology, Faculty of Bioresource Sciences, Akita Prefectural University, Akita, Japan.
Hisashi HemmiDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furou-chou, Chikusa, Nagoya, Aichi, 464-8601, Japan.
Tohru YoshimuraDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furou-chou, Chikusa, Nagoya, Aichi, 464-8601, Japan.
Tomokazu ItoDepartment of Applied Biosciences, Graduate School of Bioagricultural Sciences, Nagoya University, Furou-chou, Chikusa, Nagoya, Aichi, 464-8601, Japan.ORCID https://orcid.org/0000-0002-3131-6724

Funding

JSPS KAKENHI 16K18686JSPS KAKENHI 17KK0153JSPS KAKENHI 23K04995
6 · The paper itself

Abstract

Various lactic acid bacteria synthesize d-branched-chain amino acids (d-BCAA) during growth, but their physiological function remains largely elusive. The pyridoxal phosphate-dependent enzyme isoleucine 2-epimerase (ILEP) has been identified as the key enzyme responsible for d-BCAA biosynthesis. Comparative genomic analyses revealed that genes encoding ILEP and an uncharacterized amino acid-polyamine-organocation (APC) family transporter are adjacent in several d-BCAA-producing bacteria, suggesting a functional link between these two proteins in d-BCAA metabolism. In this study, we investigated the function of the APC family transporter from Lactobacillus fermentum (LfAAP). Using heterologous expression systems in Escherichia coli and Lactococcus lactis, we demonstrated that LfAAP functions as a non-stereospecific BCAA importer. Mutational analysis revealed that Ala119 and Met331 play critical roles in substrate recognition. Heterologous expression of LfAAP and/or LfILEP in a L. lactis strain, which lacks the ILEP-AAP genes operon, revealed that ILEP functions as both synthetic and catabolic enzyme for d-BCAA. Our findings suggest that the ILEP-AAP system contribute to storage and subsequent utilization of BCAA in a form that is less accessible by other organisms, providing a potential competitive advantage in microbial environments.

Indexed as

Amino Acids, Branched-ChainBacterial ProteinsLimosilactobacillus fermentumEscherichia coliLactococcus lactisAmino Acids, Branched-ChainBacterial Proteinsd-amino acidd-branched-chain amino acidsLactic acid bacteriaTransporter

Identifiers

PMID39939291
PMCPMC11907396

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.