Evidence map›Paper›PMID 39938518›Full record

ArticleMolecular cell2025

Free introns of tRNAs as complementarity-dependent regulators of gene expression.

Regina T Nostramo, Paolo L Sinopoli, Alicia Bao, Sara Metcalf, Lauren M Peltier, Anita K Hopper

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. The regulation, function and disease relevance of cytoplasmic tRNAs.Nature reviews. Molecular cell biology · 2026
    Review
  5. Many paths to destruction: Family-specific turnover and stress responses for tRNA introns.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  6. Enzymology of the metazoan tRNA ligase complex: a lifetime in cycles.Cellular and molecular life sciences : CMLS · 2026
    Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. The highly conserved intron of tyrosine tRNA is critical forProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Regina T NostramoDepartment of Molecular Genetics & Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA.
Paolo L SinopoliDepartment of Molecular Genetics & Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA.
Alicia BaoDepartment of Molecular Genetics & Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA.
Sara MetcalfDepartment of Molecular Genetics & Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA.
Lauren M PeltierDepartment of Molecular Genetics & Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA.
Anita K HopperDepartment of Molecular Genetics & Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA; Comprehensive Cancer Center Ohio State University, Columbus, OH 43210, USA. Electronic address: hopper.64@osu.edu.

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Jennifer A. Woyach · 1985 to 2026
$132.3M
tRNA processing and nuclear-cytoplasmic dynamicsR01GM122884 · NIGMS · OHIO STATE UNIVERSITY · PI HOPPER, ANITA K · 2017 to 2024
$2.7M
NCI NIH HHS P30 CA016058NIGMS NIH HHS R01 GM122884
6 · The paper itself

Abstract

From archaea to humans, a subset of transfer RNA (tRNA) genes possesses an intron that must be removed from transcribed pre-tRNAs to generate mature, functional tRNAs. Evolutionary conservation of tRNA intron sequences suggests that tRNA introns perform sequence-dependent cellular functions, which are presently unknown. Here, we demonstrate that free introns of tRNAs (fitRNAs) in Saccharomyces cerevisiae serve as small regulatory RNAs that inhibit mRNA levels via long (13-15 nt) statistically improbable stretches of (near) perfect complementarity to mRNA coding regions. The functions of fitRNAs are both constitutive and inducible because genomic deletion or inducible overexpression of tRNA

Indexed as

Gene Expression Regulation, FungalIntronsRNA, FungalRNA, TransferSaccharomyces cerevisiaeOxidative StressRNA, MessengerRNA StabilitySaccharomyces cerevisiae ProteinsRNA, FungalRNA, MessengerRNA, TransferSaccharomyces cerevisiae ProteinsfitRNAsgene regulationintronsLos1oxidative stressSen2tet-on tRNA intron expressionTom70tRNA intron-ORF complementaritytRNA intron sequence conservation

Identifiers

PMID39938518
PMCPMC11845289

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.