Evidence map›Paper›PMID 39937906›Full record

ArticleScience advances2025

VARP binds SNX27 to promote endosomal supercomplex formation on membranes.

Mintu Chandra, Amy K Kendall, Marijn G J Ford, Lauren P Jackson

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors.

Mintu ChandraDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0003-2382-5024
Amy K KendallDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-6176-9177
Marijn G J FordDepartment of Biochemistry, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-9115-4413
Lauren P JacksonDepartment of Biological Sciences, Vanderbilt University, Nashville, TN, USA.ORCID 0000-0002-3705-6126

Funding

The molecular role of tepsin in membrane trafficking pathwaysR35GM119525 · NIGMS · VANDERBILT UNIVERSITY · PI Lauren Parker Jackson · 2016 to 2026
$4.3M
Thermo Scientific Glacios cryo-TEMS10OD030292 · OD · VANDERBILT UNIVERSITY · PI NAKAGAWA, TERUNAGA · 2021 to 2021
$2.0M
Regulation of membrane remodeling by the SNX-BAR protein familyR35GM139546 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FORD, MARIJN GERARD JOHANNES · 2021 to 2021
$511k
NIGMS NIH HHS R35 GM119525NIGMS NIH HHS R35 GM139546NIH HHS S10 OD030292
6 · The paper itself

Abstract

Endosomes are vital cellular hubs for sorting protein cargoes. Retromer (VPS26/VPS35/VPS29) binds multiple sorting nexin (SNX) proteins on endosomal membranes, but assembly mechanisms of metazoan SNX/Retromer complexes remain elusive. We combine biochemical and biophysical approaches with AlphaFold modeling to identify a previously unidentified direct interaction between SNX27 and VARP. A full biochemical reconstitution system using purified proteins systematically tests how and when coats are recruited to membranes to generate tubules. We demonstrate and measure how specific combinations of Retromer with SNX27, ESCPE-1 (SNX2/SNX6), or both complexes, remodel membranes containing physiological cargo and phospholipids. SNX27, alone and with Retromer, remodels membranes with PI(3)P and PDZbm cargo. ESCPE-1 deforms membranes with bis-phosphoinositides and CI-MPR cargo but surprisingly does not recruit Retromer. VARP co-immunoprecipitates all coat components in cells and is required to reconstitute a proposed endosomal "supercomplex" (SNX27, ESCPE-1, and Retromer) in vitro. These data suggest VARP regulates metazoan endosomal coat assembly to promote cargo sorting out of endosomes.

Indexed as

EndosomesSorting NexinsVesicular Transport ProteinsHumansProtein BindingProtein TransportSNX27 protein, humanSorting NexinsVesicular Transport Proteins

Identifiers

PMID39937906
PMCPMC11817943

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.