Evidence map›Paper›PMID 39937210›Full record

ArticleMolecular biology reports2025

Functional validation of putative PIP-box promoters of Xanthomonas citri subsp. citri using GFP as a reporter.

Luana Cristina Amistá, Rafael Marini Ferreira, Murilo Ferreira Othonicar, Carlos Antonio Couto Lima, Alessandro de Mello Varani, Adriano Ferrasa, Maria Inês Tiraboschi Ferro, Jesus Aparecido Ferro

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Article in Molecular biology reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. UnconditionalSynthetic and systems biotechnology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Luana Cristina AmistáDepartament of Agricultural and Environmental Biotechnology, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil.ORCID https://orcid.org/0009-0001-1618-8269
Rafael Marini FerreiraDepartament of Agricultural and Environmental Biotechnology, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil.ORCID https://orcid.org/0000-0003-0262-2252
Murilo Ferreira OthonicarDepartament of Agricultural and Environmental Biotechnology, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil.ORCID https://orcid.org/0000-0002-2909-3330
Carlos Antonio Couto LimaDepartament of Agricultural and Environmental Biotechnology, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil.ORCID https://orcid.org/0000-0002-6518-116X
Alessandro de Mello VaraniDepartament of Agricultural and Environmental Biotechnology, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil.ORCID https://orcid.org/0000-0002-8876-3269
Adriano FerrasaDepartment of Informatics, State University of Ponta Grossa (UEPG), Ponta Grossa, Paraná, Brazil.ORCID https://orcid.org/0000-0001-6653-1849
Maria Inês Tiraboschi FerroDepartament of Agricultural and Environmental Biotechnology, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil.ORCID https://orcid.org/0000-0003-3389-9131
Jesus Aparecido FerroDepartament of Agricultural and Environmental Biotechnology, São Paulo State University (UNESP), Jaboticabal, São Paulo, Brazil. jesus.ferro@unesp.br.ORCID https://orcid.org/0000-0002-3966-1303

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico #304367/2022-2Conselho Nacional de Desenvolvimento Científico e Tecnológico #310931/2022-3Conselho Nacional de Desenvolvimento Científico e Tecnológico #316282/2023-0
6 · The paper itself

Abstract

backgroundPlant-Inducible Promoter boxes (PIP-boxes) are conserved sequences found within the promoter regions of various genes in phytopathogenic bacteria, including the Gram-negative bacterium Xanthomonas citri subsp. citri (X. citri), the causative agent of citrus canker. These sequences are activated by host plant signals during infection, playing a critical role in regulating genes linked to pathogenicity and virulence, thereby facilitating plant-pathogen interactions. METHODS AND

resultsThis study evaluated the functionality and expression strength of putative PIP-box sequences located upstream of the XAC0360, XAC0416, XAC2370, and XAC2922 genes in X. citri subsp. citri strain 306 (X. citri 306). Engineered strains of X. citri 306 were created with expression vectors containing a gfp reporter gene driven by each respective PIP-box sequence. GFP expression was assessed in planta through fluorescence microscopy and quantitative PCR (qPCR). Fluorescence microscopy showed that the PIP-box promoter of XAC0416 exhibited strong transcriptional activity, with significantly higher fluorescence intensity than the promoters of XAC0360, XAC2370, and XAC2922. This indicates that the XAC0416 PIP-box is particularly effective for driving GFP expression and may serve as a valuable tool for future gene expression studies. Furthermore, the lack of fluorescence in the wild-type X. citri strain confirms the specificity of the engineered expression system.

conclusionsThis study demonstrates that the tested PIP-box sequences function as active promoters, each exhibiting distinct expression strengths. The strong activity of the XAC0416 PIP-box highlights its potential for applications in the study of specific genes in X. citri.

Indexed as

Green Fluorescent ProteinsPromoter Regions, GeneticXanthomonasBacterial ProteinsCitrusGene Expression Regulation, BacterialGenes, ReporterPlant DiseasesVirulenceBacterial ProteinsGreen Fluorescent ProteinsGene expressionInducible promotersPlant-pathogen interactionVirulence

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.