Evidence map›Paper›PMID 39934882›Full record

ArticlePlant methods2025

Deep-learning-ready RGB-depth images of seedling development.

Félix Mercier, Geoffroy Couasnet, Angelina El Ghaziri, Nizar Bouhlel, Alain Sarniguet, Muriel Marchi, Matthieu Barret, David Rousseau

Abstract read
In one paragraph

Article in Plant methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Félix MercierUniversité d'Angers, 40 Rue de Rennes, 49000, Angers, France.
Geoffroy CouasnetUniversité d'Angers, 40 Rue de Rennes, 49000, Angers, France.
Angelina El GhaziriInstitut Agro, 2 rue André Le Nôtre, 49000, Angers, France.
Nizar BouhlelInstitut Agro, 2 rue André Le Nôtre, 49000, Angers, France.
Alain SarniguetUniversité d'Angers, 40 Rue de Rennes, 49000, Angers, France.
Muriel MarchiUniversité d'Angers, 40 Rue de Rennes, 49000, Angers, France.
Matthieu BarretUniversité d'Angers, 40 Rue de Rennes, 49000, Angers, France.
David RousseauUniversité d'Angers, 40 Rue de Rennes, 49000, Angers, France. david.rousseau@univ-angers.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the era of machine learning-driven plant imaging, the production of annotated datasets is a very important contribution. In this data paper, a unique annotated dataset of seedling emergence kinetics is proposed. It is composed of almost 70,000 RGB-depth frames and more than 700,000 plant annotations. The dataset is shown valuable for training deep learning models and performing high-throughput phenotyping by imaging. The ability of such models to generalize to several species and outperform the state-of-the-art owing to the delivered dataset is demonstrated. We also discuss how this dataset raises new questions in plant phenotyping.

Indexed as

Data setDeep learningRGB-depthSeedling kinetics

Identifiers

PMID39934882
PMCPMC11817399

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.