Evidence map›Paper›PMID 39934774›Full record

ArticleCell communication and signaling : CCS2025

sdRNA-D43 derived from small nucleolar RNA snoRD43 improves chondrocyte senescence and osteoarthritis progression by negatively regulating PINK1/Parkin-mediated mitophagy pathway via dual-targeting NRF1 and WIPI2.

Zengfa Deng, Changzhao Li, Shu Hu, Yanlin Zhong, Wei Li, Zhencan Lin, Xiaolin Mo, Ming Li, Dongliang Xu, Dianbo Long and 2 more

Abstract read
In one paragraph

Article in Cell communication and signaling : CCS, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Zengfa Deng *Department of Sports Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China.
Changzhao Li *Department of Joint Surgery, The First Affiliated Hospital, Sun Yat-Sen University, Guangzhou, Guangdong, China.
Shu Hu *Department of Joint Surgery and Sports Medicine, Center for Orthopedic Surgery, The Third Affiliated Hospital of Southern Medical University, Guangzhou, China.
Yanlin ZhongDepartment of Sports Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China.
Wei LiDepartment of Sports Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China.
Zhencan LinDepartment of Sports Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China.
Xiaolin MoDepartment of Sports Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China.
Ming LiDepartment of Sports Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China.
Dongliang XuDepartment of Joint Surgery, The First Affiliated Hospital, Sun Yat-Sen University, Guangzhou, Guangdong, China.
Dianbo LongDepartment of Sports Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. longdb@mail2.sysu.edu.cn.
Guping MaoDepartment of Sports Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. maogp@mail2.sysu.edu.cn.
Yan KangDepartment of Sports Medicine, The First Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China. kangyan2@mail.sysu.edu.cn.

Funding

China State-funded Postdoctoral Researchers Program GZC20233265Fundamental Research Funds for the Central Universities, Sun Yat-sen University 80000-31610012Guangdong Basic and Applied Basic Research Foundation Natural Science Fund Project- Youth Promotion Project 2024A1515030260Guangdong Provincial Natural Science Foundation of China 2023A1515010142Guangzhou Key Science and Technology Program-Special Topics of Science and Technology Projects in Agriculture and Social Development 2023B03J0001Science and Technology Project of Guangzhou City, China 202201010941the 5010 Clinical Research Project of Sun Yat-sen University 2010005the National Nature Science Foundation of China 82202739 and 82202735
6 · The paper itself

Abstract

backgroundChondrocyte senescence play an essential role in osteoarthritis (OA) progression. Recent studies have shown that snoRNA-derived RNA fragments (sdRNAs) are novel regulators of post-transcriptional gene expression. However, the expression profiles and their role in post-transcriptional gene regulation in chondrocyte senescence and OA progression is unknown. Here, we determined sdRNAs expression profile and explored sdRNA-D43 role in OA and its mechanism.

methodsWe used qPCR arrays to determine sdRNAs expression in the chondrocytes of areas undamaged and damaged of the three knee OA samples. SdRNA-D43 expression was determined using quantitative reverse transcription-polymerase chain reaction and in situ hybridization. Then, bioinformatics analysis was conducted on the target genes that might be silenced by sdRNA-D43. Primary chondrocytes of damaged regions of knee OA samples were transfected with a sdRNA-D43 inhibitor or mimic to determine their functions, including in relation to mitophagy and chondrocyte senescence. Argonaute2-RNA immunoprecipitation and luciferase reporter assays were conducted to determine the target gene of sdRNA-D43. In a rat OA model induced by monosodium iodoacetate, adeno-associated virus sh-rat-sdRNA-D43 was injected into the knee joint cavity to assess its in vivo effects.

resultssdRNA-D43 expression were upregulated in damaged areas of knee OA cartilage with increased senescent chondrocytes. sdRNA-D43 inhibited mitophagy and promoted chondrocytes senescence during OA progression. Mechanistically, sdRNA-D43 silenced the expression of both NRF1 and WIPI2 by binding to their 3'-UTR in an Argonaute2‑dependent manner, which inhibited PINK1/Parkin-mediated pathway. Additionally, injection of AAV-sh-sdRNA-D43 alleviated the progression of OA in a monosodium iodoacetate-induced rat model.

conclusionOur results reveal an important role for a novel sdRNA-D43 in OA progression. sdRNA-D43 improves chondrocyte senescence by negatively regulating PINK1/Parkin-mediated mitophagy pathway via dual-targeting NRF1 and WIPI2, which provide a potential therapeutic strategy for OA treatment.

Indexed as

Cellular SenescenceChondrocytesDisease ProgressionMitophagyOsteoarthritisRNA, Small NucleolarUbiquitin-Protein LigasesAnimalsHumansMaleProtein KinasesPTEN-Induced Putative KinaseRatsRats, Sprague-DawleySignal Transductionparkin proteinProtein KinasesPTEN-Induced Putative KinaseRNA, Small NucleolarUbiquitin-Protein LigasesChondrocyte senescenceMitophagyOsteoarthritissdRNA-D43snoRNA

Identifiers

PMID39934774
PMCPMC11817878

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.