Evidence map›Paper›PMID 39934262›Full record

ArticleScientific reports2025

Transcriptomic and metabolomic analyses of Tartary buckwheat roots during cadmium stress.

Hanmei Du, Lu Tan, Changhe Wei, Shengchun Li, Zhou Xu, Qinghai Wang, Qiuzhu Yu, Peter R Ryan, Hongyou Li, An'hu Wang

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hanmei DuPanxi Featured Crops Research and Utilization Key Laboratory of Sichuan Province, Xichang University, No. 1 Xuefu Road, An'ning, Xichang, 615000, People's Republic of China. duhanmei1027@163.com.
Lu TanPanxi Featured Crops Research and Utilization Key Laboratory of Sichuan Province, Xichang University, No. 1 Xuefu Road, An'ning, Xichang, 615000, People's Republic of China.
Changhe WeiPanxi Featured Crops Research and Utilization Key Laboratory of Sichuan Province, Xichang University, No. 1 Xuefu Road, An'ning, Xichang, 615000, People's Republic of China.
Shengchun LiPanxi Featured Crops Research and Utilization Key Laboratory of Sichuan Province, Xichang University, No. 1 Xuefu Road, An'ning, Xichang, 615000, People's Republic of China.
Zhou XuPanxi Featured Crops Research and Utilization Key Laboratory of Sichuan Province, Xichang University, No. 1 Xuefu Road, An'ning, Xichang, 615000, People's Republic of China.
Qinghai WangPanxi Featured Crops Research and Utilization Key Laboratory of Sichuan Province, Xichang University, No. 1 Xuefu Road, An'ning, Xichang, 615000, People's Republic of China.
Qiuzhu YuPanxi Featured Crops Research and Utilization Key Laboratory of Sichuan Province, Xichang University, No. 1 Xuefu Road, An'ning, Xichang, 615000, People's Republic of China.
Peter R RyanDivision of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT, 2601, Australia.
Hongyou LiResearch Center of Buckwheat Industry Technology, Guizhou Normal University, Guiyang, 550001, People's Republic of China.
An'hu WangPanxi Featured Crops Research and Utilization Key Laboratory of Sichuan Province, Xichang University, No. 1 Xuefu Road, An'ning, Xichang, 615000, People's Republic of China. 13795660264@163.com.

Funding

the National Natural Science Foundation of China 32460468the Open Project Program of Panxi Crops Research and Utilization Key Laboratory of Sichuan Province SZ21ZZ05the Science and Technology Department of Sichuan Province 2023YFN0019the Sichuan Provincial Agriculture Department Innovative Research Team SCCXTD-2024-11
6 · The paper itself

Abstract

Cadmium (Cd) can adversely damage plant growth. Therefore, understanding the control molecular mechanisms of Cd accumulation will benefit the development of strategies to reduce Cd accumulation in plants. This study performed transcriptomic and metabolomic analyses on the roots of a Cd-tolerant Tartary buckwheat cultivar following 0 h (CK), 6 h (T1), and 48 h (T2) of Cd treatment. The fresh weight and root length were not significantly inhibited under the T1 treatment but they were in the T2 treatment. The root's ultrastructure was seriously damaged in T2 but not in T1 treatment. This was evidenced by deformed cell walls, altered shape and number of organelles. A total of 449, 999 differentially expressed genes (DEGs) and eight, 37 differentially expressed metabolites (DEMs) were identified in the CK versus T1 and CK versus T2 comparison, respectively. DEGs analysis found that the expression of genes related to cell wall function, glutathione (GSH) metabolism, and phenylpropanoid biosynthesis changed significantly during Cd stress. Several WRKY, MYB, ERF, and bHLH transcription factors and transporters also responded to Cd treatment. Our results indicate that Cd stress affects cell wall function and GSH metabolism and that changes in these pathways might contribute to mechanisms of Cd tolerance in Tartary buckwheat.

Indexed as

CadmiumFagopyrumMetabolomePlant RootsStress, PhysiologicalTranscriptomeCell WallGene Expression ProfilingGene Expression Regulation, PlantGlutathioneMetabolomicsPlant ProteinsCadmiumGlutathionePlant ProteinsCadmiumCell wallGlutathioneMetabolomeTartary buckwheatTranscriptome

Identifiers

PMID39934262
PMCPMC11814136

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.