Evidence map›Paper›PMID 39934150›Full record

ArticleScientific reports2025

Numerical modeling of oxygen diffusion in tissue spheroids undergoing fusion using function representation and finite volumes.

Katherine Vilinski-Mazur, Bogdan Kirillov, Oleg Rogozin, Dmitry Kolomenskiy

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Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Katherine Vilinski-MazurCenter for Materials Technologies, Skolkovo Institute of Science and Technology, Moscow, Russia.
Bogdan KirillovCenter for Materials Technologies, Skolkovo Institute of Science and Technology, Moscow, Russia. Bogdan.Kirillov@skoltech.ru.
Oleg RogozinCenter for Materials Technologies, Skolkovo Institute of Science and Technology, Moscow, Russia.
Dmitry KolomenskiyCenter for Materials Technologies, Skolkovo Institute of Science and Technology, Moscow, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A three-dimensional cell culture called a spheroid serves as a foundational entity in a wide variety of modern tissue engineering applications, including 3D-bioprinting and preclinical drug testing. Lack of oxygen within tissue spheroids hinders metabolism of cells and eventually leads to cell death. Prevention of necrosis is crucial to success of tissue engineering methods and such prevention requires estimation of cell viability in the spheroid. We propose a novel approach for numerical modeling of diffusion in tissue spheroids during their fusion. The approach is based on numerical solutions of partial differential equations and the application of Function Representation (FRep) framework for geometric modeling. We present modeling of oxygen diffusion based on meshes derived from the geometry of fusing spheroids, a method for selecting optimal spheroid size, and several statistics for estimating cellular viability. Our findings provide insights into oxygen diffusion in three-dimensional cell cultures thus improving the robustness of biotechnological methods that employ tissue spheroids.

Indexed as

Models, BiologicalOxygenSpheroids, CellularCell Culture Techniques, Three DimensionalCell SurvivalDiffusionHumansTissue EngineeringOxygen

Identifiers

PMID39934150
PMCPMC11814134

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.