Evidence map›Paper›PMID 39933508›Full record

ArticleBiochemistry2025

Distinct Acyl Carrier Protein Docking Sites Help Mediate the Opposite Stereoselectivities of A- and B-type Modular Polyketide Synthase Ketoreductases.

Katherine A Ray, Sally N Lin, Adrian T Keatinge-Clay

Abstract read
In one paragraph

Article in Biochemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Katherine A RayDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, United States.
Sally N LinDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, United States.
Adrian T Keatinge-ClayDepartment of Molecular Biosciences, The University of Texas at Austin, Austin, Texas 78712, United States.ORCID 0000-0002-4358-7628

Funding

The Progressive Supranuclear Palsy Clinical Trial Platform (PTP)R01AG085029 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BOXER, ADAM L., LITVAN, IRENE · 2024 to 2025
$30.3M
Determining the Architectures and Activities of Polyketide Synthase ModulesR01GM106112 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI KEATINGE-CLAY, ADRIAN TRISTAN · 2013 to 2025
$3.9M
Genetic Factors of Bone Loss in Older Adults Taking AntidepressantsR01AR073017 · NIAMS · WASHINGTON UNIVERSITY · PI PETERSON, TIMOTHY R · 2018 to 2021
$1.6M
Mitochondrial Metabolites to Treat Parkinson's DiseaseR03AG023265 · NIA · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI AMES, BRUCE N · 2004 to 2005
$160k
NIAMS NIH HHS R01 AR073017NIA NIH HHS R01 AG085029NIA NIH HHS R03 AG023265NIGMS NIH HHS R01 GM106112
6 · The paper itself

Abstract

The domains of modular polyketide synthases (PKSs) collaborate to extend and process polyketide intermediates; however, most of their interactions with one another remain mysterious. We used AlphaFold 2 to investigate how acyl carrier proteins (ACPs) present intermediates to ketoreductases (KRs), processing domains capable of not only setting the stereochemical orientations of β-hydroxyl substituents but also of α-substituents. In modules that do not contain a dehydratase (DH), the A- and B-type KRs that, respectively, generate l- and d-oriented β-hydroxy groups are predicted to possess distinct ACP docking sites. In modules containing DHs, where A-type KRs are much less common, both KR types are predicted to possess an ACP-docking site equivalent to that of B-type KRs from modules without DHs. To investigate this most common ACP docking site, mutagenesis was performed on 20 residues of the KR from the second pikromycin module within the model triketide synthase

Indexed as

Acyl Carrier ProteinAlcohol OxidoreductasesBacterial ProteinsPolyketide SynthasesBinding SitesModels, MolecularMolecular Docking SimulationStereoisomerismSubstrate SpecificityAcyl Carrier ProteinAlcohol OxidoreductasesBacterial Proteinspolyketide synthase ketoreductasePolyketide Synthases

Identifiers

PMID39933508
PMCPMC11920649

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.