Evidence map›Paper›PMID 39930093›Full record

ArticleNature immunology2025

Mechanisms of NLRP3 activation and inhibition elucidated by functional analysis of disease-associated variants.

Shouya Feng, Matthew C Wierzbowski, Katja Hrovat-Schaale, Andreas Dumortier, Yaoyuan Zhang, Maria Zyulina, Paul J Baker, Thomas Reygaerts, Annemarie Steiner, Dominic De Nardo and 8 more

Abstract read
In one paragraph

Article in Nature immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. ACSL4-Dependent Lysosomal Lipid Peroxidation Links WTAP-Mediated mAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. AI platform for CRISPR functional mapping and function-based drug design.bioRxiv : the preprint server for biology · 2026
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Shouya FengCentre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia.
Matthew C WierzbowskiInflammation Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0009-0005-9749-627X
Katja Hrovat-SchaaleInflammation Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0000-0002-0398-5015
Andreas DumortierInflammation Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.ORCID http://orcid.org/0009-0004-6716-9983
Yaoyuan ZhangInflammation Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.
Maria ZyulinaCentre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia.
Paul J BakerCentre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia.ORCID http://orcid.org/0000-0002-3642-2366
Thomas ReygaertsInflammation Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.
Annemarie SteinerInflammation Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, Australia.
Dominic De NardoDepartment of Biochemistry and Molecular Biology, Immunity Program, Biomedicine Discovery Institute, Monash University, Clayton, Victoria, Australia.ORCID http://orcid.org/0000-0002-7045-4695
Dhanya Lakshmi NarayananCentre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia.
Florian MilhavetDepartment of Molecular genetics and Cytogenomics, CHU Montpellier, Rare and Autoinflammatory Diseases Unit, University of Montpellier, CEREMAIA, Institute for Regenerative Medicine and Biotherapy, INSERMU1183, Montpellier, France.
Alberto Pinzon-CharryQueensland Paediatric Immunology and Allergy Service, Children's Health Queensland, Brisbane, Queensland, Australia.
Juan Ignacio ArosteguiDepartment of Immunology, Hospital Clínic, Barcelona, Spain.ORCID http://orcid.org/0000-0003-4757-504X
Raju P KhubchandaniSectional Head Pediatric Rheumatology, SRCC Children's Hospital, Mumbai, India.
Matthias GeyerInstitute of Structural Biology, Medical Faculty, University of Bonn, Bonn, Germany.ORCID http://orcid.org/0000-0002-7718-5002
Guilaine BoursierDepartment of Molecular genetics and Cytogenomics, CHU Montpellier, Rare and Autoinflammatory Diseases Unit, University of Montpellier, CEREMAIA, Institute for Regenerative Medicine and Biotherapy, INSERMU1183, Montpellier, France.ORCID http://orcid.org/0000-0002-2903-3135
Seth L MastersCentre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia. seth.masters@hudson.org.au.ORCID http://orcid.org/0000-0003-4763-576X

Funding

Department of Health | National Health and Medical Research Council (NHMRC) GNT2008699Deutsche Forschungsgemeinschaft (German Research Foundation) EXC2151-390873048Deutsche Forschungsgemeinschaft (German Research Foundation) GRK 2168Jack Brockhoff Foundation 5252
6 · The paper itself

Abstract

The NLRP3 inflammasome is a multiprotein complex that mediates caspase-1 activation and the release of proinflammatory cytokines, including interleukin (IL)-1β and IL-18. Gain-of-function variants in the gene encoding NLRP3 (also called cryopyrin) lead to constitutive inflammasome activation and excessive IL-1β production in cryopyrin-associated periodic syndromes (CAPS). Here we present functional screening and automated analysis of 534 NLRP3 variants from the international INFEVERS registry and the ClinVar database. This resource captures the effect of NLRP3 variants on ASC speck formation spontaneously, at low temperature, after inflammasome stimulation and with the specific NLRP3 inhibitor MCC950. Most notably, our analysis facilitated the updated classification of NLRP3 variants in INFEVERS. Structural analysis suggested multiple mechanisms by which CAPS variants activate NLRP3, including enhanced ATP binding, stabilizing the active NLRP3 conformation, destabilizing the inactive NLRP3 complex and promoting oligomerization of the pyrin domain. Furthermore, we identified pathogenic variants that can hypersensitize the activation of NLRP3 in response to nigericin and cold temperature exposure. We also found that most CAPS-related NLRP3 variants can be inhibited by MCC950; however, NLRP3 variants with changes to proline affecting helices near the inhibitor binding site are resistant to MCC950, as are variants in the pyrin domain, which likely trigger activation directly with the pyrin domain of ASC. Our findings could help stratify the CAPS population for NLRP3 inhibitor clinical trials and our automated methodologies can be implemented for molecules with a different mechanism of activation and in laboratories worldwide that are interested in adding new functionally validated NLRP3 variants to the resource. Overall, our study provides improved diagnosis for patients with CAPS, mechanistic insight into the activation of NLRP3 and stratification of patients for the future application of targeted therapeutics.

Indexed as

Cryopyrin-Associated Periodic SyndromesInflammasomesNLR Family, Pyrin Domain-Containing 3 ProteinFuransHEK293 CellsHumansIndenesInterleukin-1betaSulfonamidesFuransIndenesInflammasomesInterleukin-1betaN-(1,2,3,5,6,7-hexahydro-S-indacen-4-ylcarbamoyl)-4-(2-hydroxy-2-propanyl)-2-furansulfonamideNLR Family, Pyrin Domain-Containing 3 ProteinNLRP3 protein, humanSulfonamides

Identifiers

PMID39930093
PMCPMC11876074

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.