Evidence map›Paper›PMID 39929988›Full record

ArticleNature chemistry2025

Synthetic biomolecular condensates enhance translation from a target mRNA in living cells.

Daniel Mark Shapiro, Sonal Deshpande, Seyed Ali Eghtesadi, Miranda Zhong, Cassio Mendes Fontes, David Fiflis, Dahlia Rohm, Junseon Min, Taranpreet Kaur, Joanna Peng and 6 more

Abstract read
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In one paragraph

Article in Nature chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Centriolar satellites regulateMolecular biology of the cell · 2026
    Article
  8. Reversible Nucleolar Complex Coacervation by Short Cationic Peptides.Journal of the American Chemical Society · 2026
    Article
  9. Article
  10. The Polymers of Life: Exploring Cellular Function Through Polymer Concepts.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  11. Review
  12. Review
  13. Centriolar satellites regulatebioRxiv : the preprint server for biology · 2026
    Article
  14. Review
  15. Article
  16. Article
  17. Synthetic Biomolecular Condensates: Design Principles and Applications.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  18. Article
  19. Article
  20. Mechanisms and Pathological Significance of Liquid-Liquid Phase Separation in Bacteria.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Daniel Mark Shapiro *Department of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID 0000-0002-8327-2911
Sonal Deshpande *Department of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID 0000-0003-3055-0065
Seyed Ali Eghtesadi *Department of Biomedical Engineering, Duke University, Durham, NC, USA.
Miranda ZhongDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Cassio Mendes FontesDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID 0000-0003-3157-478X
David FiflisDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID 0000-0003-3411-8560
Dahlia RohmDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Junseon MinDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Taranpreet KaurDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Joanna PengDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID 0009-0008-0158-6476
Max NeyDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Jonathan SuDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.
Yifan DaiDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID 0000-0002-1009-5790
Aravind AsokanDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID 0000-0001-5563-4877
Charles A GersbachDepartment of Biomedical Engineering, Duke University, Durham, NC, USA.ORCID 0000-0003-1478-4013
Ashutosh ChilkotiDepartment of Biomedical Engineering, Duke University, Durham, NC, USA. chilkoti@duke.edu.ORCID 0000-0003-1301-1836

Funding

United States Department of Defense | United States Air Force | AFMC | Air Force Office of Scientific Research (AF Office of Scientific Research) FA9550-20-1-0241U.S. Department of Health & Human Services | National Institutes of Health (NIH) MIRA R35GM127042
6 · The paper itself

Abstract

Biomolecular condensates composed of proteins and RNA are one approach by which cells regulate post-transcriptional gene expression. Their formation typically involves the phase separation of intrinsically disordered proteins with a target mRNA, sequestering the mRNA into a liquid condensate. This sequestration regulates gene expression by modulating translation or facilitating RNA processing. Here we engineer synthetic condensates using a fusion of an RNA-binding protein, the human Pumilio2 homology domain (Pum2), and a synthetic intrinsically disordered protein, an elastin-like polypeptide (ELP), that can bind and sequester a target mRNA transcript. In protocells, sequestration of a target mRNA largely limits its translation. Conversely, in Escherichia coli, sequestration of the same target mRNA increases its translation. We characterize the Pum2-ELP condensate system using microscopy, biophysical and biochemical assays, and RNA sequencing. This approach enables the modulation of cell function via the formation of synthetic biomolecular condensates that regulate the expression of a target protein.

Indexed as

Biomolecular CondensatesProtein BiosynthesisRNA-Binding ProteinsRNA, MessengerElastinEscherichia coliHumansIntrinsically Disordered ProteinsPeptidesElastinIntrinsically Disordered ProteinsPeptidesRNA-Binding ProteinsRNA, Messenger

Identifiers

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.