Evidence map›Paper›PMID 39927982›Full record

ArticleThe ISME journal2025

Proteomic evidence for aerobic methane production in groundwater by methylotrophic Methylotenera.

Shengjie Li, Xiaoli Dong, Pauline Humez, Joanna Borecki, Jean Birks, Cynthia McClain, Bernhard Mayer, Marc Strous, Muhe Diao

Abstract read
In one paragraph

Article in The ISME journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Shengjie LiDepartment of Earth, Energy, and Environment, University of Calgary, Calgary, AB T2N 1N4, Canada.
Xiaoli DongDepartment of Earth, Energy, and Environment, University of Calgary, Calgary, AB T2N 1N4, Canada.
Pauline HumezDepartment of Earth, Energy, and Environment, University of Calgary, Calgary, AB T2N 1N4, Canada.
Joanna BoreckiAlberta Environment and Protected Areas, Calgary, AB T2L 2K8, Canada.
Jean BirksAlberta Environment and Protected Areas, Calgary, AB T2L 2K8, Canada.
Cynthia McClainDepartment of Earth, Energy, and Environment, University of Calgary, Calgary, AB T2N 1N4, Canada.
Bernhard MayerDepartment of Earth, Energy, and Environment, University of Calgary, Calgary, AB T2N 1N4, Canada.
Marc StrousDepartment of Earth, Energy, and Environment, University of Calgary, Calgary, AB T2N 1N4, Canada.
Muhe DiaoDepartment of Earth, Energy, and Environment, University of Calgary, Calgary, AB T2N 1N4, Canada.

Funding

Canada First Research Excellence FundCanada Foundation for InnovationDigital Research Alliance of CanadaDiscovery Grants to Marc Strous and Bernhard Mayer, Canada Research Chair CRC-2020-00257Fundamental Research Funds for the Central Universities to Muhe DiaoGovernment of AlbertaNatural Sciences and Engineering Research CouncilUniversity of Calgary
6 · The paper itself

Abstract

Members of Methylotenera are signature denitrifiers and methylotrophs commonly found together with methanotrophic bacteria in lakes and freshwater sediments. Here, we show that three distinct Methylotenera ecotypes were abundant in methane-rich groundwaters recharged during the Pleistocene. Just like in surface water biomes, groundwater Methylotenera often co-occurred with methane-oxidizing bacteria, even though they were generally unable to denitrify. One abundant Methylotenera ecotype expressed a pathway for aerobic methane production from methylphosphonate. This phosphate-acquisition strategy was recently found to contribute to methane production in the oligotrophic, oxic upper ocean. Gene organization, phylogeny, and 3D protein structure of the key enzyme, carbon-phosphorus lyase subunit PhnJ, were consistent with a role in phosphate uptake. We conclude that phosphate may be a limiting nutrient in productive, methane-rich aquifers, and that methylphosphonate degradation might contribute to groundwater methane production.

Indexed as

GroundwaterMethaneProteomeAerobiosisBacterial ProteinsOrganophosphorus CompoundsPhosphatesPhylogenyProteomicsBacterial ProteinsMethanemethylphosphonic acidOrganophosphorus CompoundsPhosphatesProteomeC-P lyasegroundwatermethane paradoxmethanotrophMethyloteneramethylotrophmethylphosphonate

Identifiers

PMID39927982
PMCPMC11978286

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.