Evidence map›Paper›PMID 39927756›Full record

ArticlePlant, cell & environment2025

Defective Processing of Cytoplasmic and Chloroplast Ribosomal RNA in the Absence of Arabidopsis DXO1.

Monika Zakrzewska-Placzek, Anna Golisz-Mocydlarz, Aleksandra Kwasnik, Michal Krzyszton, Katarzyna Niedzwiecka, Joanna Kufel

Abstract read
In one paragraph

Article in Plant, cell & environment, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Arabidopsis DXO1- and RNMT1-Mediated mPlant, cell & environment · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Monika Zakrzewska-PlaczekInstitute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.ORCID http://orcid.org/0000-0002-0538-7721
Anna Golisz-MocydlarzInstitute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.ORCID https://orcid.org/0000-0002-7539-1830
Aleksandra KwasnikInstitute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.ORCID https://orcid.org/0000-0001-5569-9398
Michal KrzysztonLaboratory of Seeds Molecular Biology, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.ORCID https://orcid.org/0000-0002-9795-5588
Katarzyna NiedzwieckaInstitute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.ORCID https://orcid.org/0000-0002-9482-3918
Joanna KufelInstitute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Warsaw, Poland.ORCID https://orcid.org/0000-0001-6810-2749

Funding

This research was supported by the Narodowe Centrum Nauki.
6 · The paper itself

Abstract

Decapping 5'-3' exoribonucleases from the DXO/Rai1 family are highly conserved among eukaryotes and exhibit diverse enzymatic activities depending on the organism. The biochemical and structural properties of the plant DXO1 differ from the yeast and animal counterparts, which is reflected in the in vivo functions of this enzyme. Here we show that Arabidopsis DXO1 contributes to the efficient processing of rRNA precursors in both nucleolar/cytosolic and chloroplast maturation pathways. However, the processing defects in DXO1-deficient plants do not depend on the catalytic activity of the enzyme but rely on its plant-specific N-terminal extension, which is responsible for the interaction with the mRNA cap methyltransferase RNMT1. Our RNA sequencing analyses show that the dxo1 mutation deregulates the expression of many ribosomal protein genes, most likely leading to inefficient or delayed pre-rRNA maturation. These phenotypes are partially suppressed by RNMT1 overexpression, suggesting that defective cap synthesis may be responsible, at least to some extent, for the observed effects.

Indexed as

ArabidopsisArabidopsis ProteinsCytoplasmExoribonucleasesRNA, ChloroplastRNA, RibosomalChloroplastsGene Expression Regulation, PlantMethyltransferasesMutationRNA PrecursorsRNA Processing, Post-TranscriptionalArabidopsis ProteinsExoribonucleasesMethyltransferasesRNA, ChloroplastRNA PrecursorsRNA, RibosomalArabidopsis thalianachloroplastnucleoluspre‐rRNA processingribosome biogenesisrRNAstress response

Identifiers

PMID39927756
PMCPMC12050399

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.