Evidence map›Paper›PMID 39927546›Full record

ArticleThe Journal of chemical physics2025

On the entanglement of chromophore and solvent orbitals.

Xinwei Ji, Zheng Pei, Kim Ngan Huynh, Junjie Yang, Xiaoliang Pan, Binju Wang, Yuezhi Mao, Yihan Shao

Abstract read
In one paragraph

Article in The Journal of chemical physics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Xinwei JiKey Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, People's Republic of China.ORCID 0009-0001-3704-1565
Zheng PeiDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma 73019, USA.
Kim Ngan HuynhDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, California 92182, USA.ORCID 0009-0003-5759-8090
Junjie YangDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, USA.
Xiaoliang PanDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma 73019, USA.ORCID 0000-0002-6399-4853
Binju WangKey Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, People's Republic of China.ORCID 0000-0002-3353-9411
Yuezhi MaoDepartment of Chemistry and Biochemistry, San Diego State University, San Diego, California 92182, USA.ORCID 0000-0001-5362-4333
Yihan ShaoDepartment of Chemistry and Biochemistry, University of Oklahoma, Norman, Oklahoma 73019, USA.ORCID 0000-0001-9337-341X

Funding

Multiscale Modeling of Enzymatic Reactions and Bioimaging ProbesR35GM153297 · NIGMS · UNIVERSITY OF OKLAHOMA · PI Yihan Shao · 2024 to 2026
$1.1M
Multiscale Modeling of Enzymatic Reactions and Firefly BioluminescenceR01GM135392 · NIGMS · UNIVERSITY OF OKLAHOMA · PI SHAO, YIHAN · 2019 to 2022
$1.0M
NIGMS NIH HHS R01 GM135392NIGMS NIH HHS R35 GM153297
6 · The paper itself

Abstract

Among various types of chromophore-solvent interactions, the entanglement of chromophore and solvent orbitals, when significant, can cause the chromophore frontier orbitals to spread over to nearby solvent molecules, introducing partial charge-transfer character to the lowest excitations of the chromophore and lowering the excitation energies. While highly intuitive, the physical details of such orbital entanglement effects on the excitation energies of chromophores have yet to be fully explored. Here, using two well-known biochromophores (oxyluciferin and p-hydroxybenzyledene imidazolinone) as examples, we show that the chromophore-solvent orbital entanglements can be elucidated using two quantum mechanical embedding schemes: density matrix embedding theory and absolutely localized molecular orbitals. However, there remains a great challenge to incorporate the orbital entanglement effect in combined quantum mechanical molecular mechanical (QM/MM) calculations, and we hope that our findings will stimulate the development of new methods in that direction.

Identifiers

PMID39927546
PMCPMC11813540

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.