Evidence map›Paper›PMID 39927182›Full record

ArticleHealth science reports2025

Metagenomic Analysis of Lung Microbiome in Patients With Interstitial Lung Diseases and Sarcoidosis: An Experimental Study.

Suguru Takeuchi, Jun-Ichi Kawada, Atsushi Suzuki, Koji Sakamoto, Yuto Fukuda, Kazuhiro Horiba, Takako Suzuki, Yuka Torii, Yuichiro Shindo, Yoshinori Ito

Abstract read
In one paragraph

Article in Health science reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Suguru TakeuchiDepartment of Pediatrics Nagoya University Graduate School of Medicine Nagoya Japan.
Jun-Ichi KawadaDepartment of Pediatrics Nagoya University Graduate School of Medicine Nagoya Japan.ORCID 0000-0003-1553-2539
Atsushi SuzukiDepartment of Respiratory Medicine Nagoya University Graduate School of Medicine Nagoya Japan.
Koji SakamotoDepartment of Respiratory Medicine Nagoya University Graduate School of Medicine Nagoya Japan.
Yuto FukudaDepartment of Pediatrics Nagoya University Graduate School of Medicine Nagoya Japan.ORCID 0009-0003-8290-5005
Kazuhiro HoribaPathogen Genomics Center, National Institute of Infectious Diseases Tokyo Japan.
Takako SuzukiDepartment of Pediatrics Nagoya University Graduate School of Medicine Nagoya Japan.
Yuka ToriiDepartment of Pediatrics Nagoya University Graduate School of Medicine Nagoya Japan.
Yuichiro ShindoDepartment of Respiratory Medicine Nagoya University Graduate School of Medicine Nagoya Japan.
Yoshinori ItoDepartment of Pediatrics Nagoya University Graduate School of Medicine Nagoya Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and Aims: Interactions between the lung microbiome and pulmonary epithelium plays a pivotal role in shaping immunity in the lung. Idiopathic pulmonary fibrosis (IPF) is the most common interstitial lung disease (ILD). Some patients with IPF develop episodic acute exacerbations often associated with microbial dysbiosis in the lungs. This study aimed to investigate etiologic agents as well as the lung microbiome in patients with ILDs and sarcoidosis. Methods: This study analyzed 31 patients divided into the IPF (IPF-stable, Results: In total, 87 pathogens were detected using metagenomic NGS at the genus level. Conclusions: Bacterial sequence reads in BALF were smaller in both the IPF-stable and AE-ILD groups than in the sarcoidosis group. Dysbiosis in the lung microbiome has been observed in patients with AE-ILD and may be related to the progression of inflammation.

Indexed as

acute exacerbationinterstitial lung diseaseslung microbiomenext‐generation sequencingsarcoidosis

Identifiers

PMID39927182
PMCPMC11803077

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.