Evidence map›Paper›PMID 39925135›Full record

ArticleJournal of cell science2025

Potential ER tubular lumen sensing by intrinsically disordered regions.

Tomohiro Yorimitsu, Ken Sato

Abstract read
In one paragraph

Article in Journal of cell science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Tomohiro YorimitsuDepartment of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Tokyo 153-8902, Japan.ORCID 0009-0003-5806-9182
Ken SatoDepartment of Life Sciences, Graduate School of Arts and Sciences, University of Tokyo, Tokyo 153-8902, Japan.ORCID 0000-0002-1858-6236

Funding

Grant-in-Aid for Scientific Research from the Japanese Ministry of Education, Culture, Sports, Science and Technology 17KT0105, 19K06655 and 23K05692Grant-in-Aid for Scientific Research from the Japanese Ministry of Education, Culture, Sports, Science and Technology 18K06126, 21K06164 and 24K09361Ministry of Education, Culture, Sports, Science and Technology 18K06126University of Tokyo
6 · The paper itself

Abstract

Intrinsically disordered regions (IDRs) are known to sense the positive membrane curvature of vesicles and tubules. However, whether IDRs can sense the negative curvature of their luminal surfaces remains elusive. Here, we show that IDRs direct specific localization to endoplasmic reticulum (ER) tubules. In Saccharomyces cerevisiae, Sed4 interacts with Sec16 at the ER exit site (ERES) to promote ER export. Upon loss of this interaction, Sed4 failed to assemble at the ERES but was enriched in the ER tubules in a luminal region-dependent manner. Fusion of the Sed4 luminal region with Sec12 and Sec22, which localize throughout the ER, resulted in their enrichment in the tubules. The luminal regions of Sed4 or its homologs, predicted to be IDRs, localized to tubules when translocated alone into the ER lumen. The lumen-imported IDRs derived from cytosol-localizing Sec16 and Atg13 also exhibited tubule localization. Furthermore, Sed4 constructs in which the luminal region was replaced by these IDRs were concentrated at the ERES. Collectively, we suggest that the IDRs sense the properties of the tubule lumen, such as its surface, and facilitate Sed4 assembly at the ERES.

Indexed as

Endoplasmic ReticulumIntrinsically Disordered ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsProtein BindingProtein TransportVesicular Transport ProteinsIntrinsically Disordered ProteinsSaccharomyces cerevisiae ProteinsVesicular Transport ProteinsER exit siteER lumenER tubulesIntrinsically disordered regionSed4

Identifiers

PMID39925135
PMCPMC11959615

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.