Evidence map›Paper›PMID 39922193›Full record

ArticleMolecular cell2025

The RNA helicase HrpA rescues collided ribosomes in E. coli.

Annabelle Campbell, Hanna F Esser, A Maxwell Burroughs, Otto Berninghausen, L Aravind, Thomas Becker, Rachel Green, Roland Beckmann, Allen R Buskirk

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Collided ribosomes are rescued by the endonuclease Rae1 andbioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Annabelle CampbellDepartment of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Hanna F EsserGene Center and Department of Biochemistry, University of Munich, Munich 81377, Germany.
A Maxwell BurroughsComputational Biology Branch, Intramural Research Program, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
Otto BerninghausenGene Center and Department of Biochemistry, University of Munich, Munich 81377, Germany.
L AravindComputational Biology Branch, Intramural Research Program, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA.
Thomas BeckerGene Center and Department of Biochemistry, University of Munich, Munich 81377, Germany.
Rachel GreenDepartment of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA; Howard Hughes Medical Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Roland BeckmannGene Center and Department of Biochemistry, University of Munich, Munich 81377, Germany.
Allen R BuskirkDepartment of Molecular Biology and Genetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. Electronic address: buskirk@jhmi.edu.

Funding

BIOCHEMISTRY, CELLULAR AND MOLECULAR BIOLOGY PROGRAMT32GM007445 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREEN, RACHEL · 1985 to 2021
$24.1M
The role of collisions in rescuing stalled ribosomes in bacteriaR01GM136960 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Allen Rowdon Buskirk · 2021 to 2026
$1.9M
The role of HrpA in ribosome-associated quality control in E. coliF31AI172391 · NIAID · JOHNS HOPKINS UNIVERSITY · PI CAMPBELL, ANNABELLE · 2022 to 2024
$124k
NIAID NIH HHS F31 AI172391NIGMS NIH HHS R01 GM136960NIGMS NIH HHS T32 GM007445
6 · The paper itself

Abstract

Although many antibiotics inhibit bacterial ribosomes, the loss of known factors that rescue stalled ribosomes does not lead to robust antibiotic sensitivity in E. coli, suggesting the existence of additional mechanisms. Here, we show that the RNA helicase HrpA rescues stalled ribosomes in E. coli. Acting selectively on ribosomes that have collided, HrpA uses ATP hydrolysis to split stalled ribosomes into subunits. Cryoelectron microscopy (cryo-EM) structures reveal how HrpA simultaneously binds to two collided ribosomes, explaining its selectivity, and how its helicase module engages downstream mRNA such that, by exerting a pulling force on the mRNA, it would destabilize the stalled ribosome. These studies show that ribosome splitting is a conserved mechanism that allows proteobacteria to tolerate ribosome-targeting antibiotics.

Indexed as

Escherichia coliEscherichia coli ProteinsRibosomesRNA HelicasesAdenosine TriphosphateAnti-Bacterial AgentsCryoelectron MicroscopyHydrolysisModels, MolecularProtein BindingProtein BiosynthesisRNA, BacterialRNA, MessengerAdenosine TriphosphateAnti-Bacterial AgentsEscherichia coli ProteinsRNA, BacterialRNA HelicasesRNA, Messengercryo-EMDEAH-box proteinHrpAribosome collisionsribosome splittingSmrB

Identifiers

PMID39922193
PMCPMC11890964

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.