Evidence map›Paper›PMID 39921711›Full record

ReviewPlanta2025

Developmental processes in the Rosaceae through the lens of DNA and RNA methylation.

Tamunonengiye-Ofori Lawson, Juan-Pablo Selva, José Carballo, Mario Caccamo, Daniel J Sargent, Nada Šurbanovski

Abstract readReview
In one paragraph

Review in Planta, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Tamunonengiye-Ofori LawsonNIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.
Juan-Pablo SelvaCentro de Recursos Naturales Renovables de la Zona Semiárida (CERZOS), Universidad Nacional del Sur-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Bahía Blanca, Argentina.
José CarballoCentro de Recursos Naturales Renovables de la Zona Semiárida (CERZOS), Universidad Nacional del Sur-Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Bahía Blanca, Argentina.
Mario CaccamoNIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.
Daniel J SargentNIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK.
Nada ŠurbanovskiNIAB, 93 Lawrence Weaver Road, Cambridge, CB3 0LE, UK. nada.surbanovski@niab.com.ORCID http://orcid.org/0000-0001-9656-5193

Funding

Biotechnology and Biological Sciences Research Council BB/V016466/1
6 · The paper itself

Abstract

MAIN

conclusionThis review discusses the DNA and RNA methylation pathways and their biological roles in Rosaceae developmental processes relevant for breeding and production. The Rosaceae is a plant family of great importance for human nutrition and health. Many traits and developmental processes of the Rosaceae are influenced by epigenetic methylation, functions of which are now being unravelled in several important species of this family. Methylation of DNA at the 5th position of cytosine (5mC) is a well-established epigenetic mark that affects important cellular processes such as gene expression and genome stability and is involved in a wide range of plant biological functions. Further to this, recent technological advances have uncovered other naturally occurring chemical modifications of DNA and RNA as additional layers of regulatory epigenetic information in plants. In this review we give a comprehensive summary of plant 5-methylcytosine DNA methylation mechanisms and review their components identified in species of the Rosaceae family. We detail and discuss the role of 5mC DNA methylation dynamics in Rosaceae developmental processes, including phase transition, bud development, bud dormancy, plant architecture, plant regeneration, fruit development, ripening and senescence. We then review recent advances in understanding the newly identified nucleic acid modifications, N

Indexed as

DNA MethylationDNA, PlantRNA, PlantRosaceae5-MethylcytosineEpigenesis, GeneticGene Expression Regulation, PlantRNA Methylation5-MethylcytosineDNA, PlantRNA, PlantDNA methylationEpigeneticsPlant developmentRdDMRNA methylationRosaceae

Identifiers

PMID39921711
PMCPMC11807061

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.