Evidence map›Paper›PMID 39921382›Full record

ArticleJournal of experimental botany2025

LIPID RICH 1 modulates allocation of carbon between starch and triacylglycerol in Arabidopsis leaves.

Mebae Yamaguchi, Shuji Shigenobu, Katsushi Yamaguchi, Yasuhiro Higashi, Yozo Okazaki, Kazuki Saito, Emi Mishiro-Sato, Keiko Kano, Ryosuke Sugiyama, Mami Yamazaki and 5 more

Abstract read
In one paragraph

Article in Journal of experimental botany, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Development of phytochemical genomics: From decoding metabolome to functional genomics and biotechnology of plant metabolism.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Mebae YamaguchiGraduate School of Horticulture, Chiba University, Matsudo, Chiba 271-8510, Japan.
Shuji ShigenobuTrans-Scale Biology Center, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan.ORCID 0000-0003-4640-2323
Katsushi YamaguchiTrans-Scale Biology Center, National Institute for Basic Biology, Okazaki, Aichi 444-8585, Japan.ORCID 0000-0001-6871-7882
Yasuhiro HigashiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0003-0784-7960
Yozo OkazakiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.
Kazuki SaitoRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa 230-0045, Japan.ORCID 0000-0001-6310-5342
Emi Mishiro-SatoInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan.
Keiko KanoInstitute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Chikusa, Nagoya, Aichi 464-8601, Japan.
Ryosuke SugiyamaPlant Molecular Science Center, Chiba University, Chiba 260-8675, Japan.
Mami YamazakiPlant Molecular Science Center, Chiba University, Chiba 260-8675, Japan.
Shigeo S SuganoBioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Ibaraki 305-8566, Japan.ORCID 0000-0001-9986-2839
Shuichi FukuyoshiInstitute of Medical, Pharmaceutical and Health Sciences, Kanazawa University, Kanazawa, Ishikawa 920-1192, Japan.
Haruko UedaFaculty of Science and Engineering, Konan University, Kobe, Hyogo 658-8501, Japan.
Ikuko Hara-NishimuraFaculty of Science and Engineering, Konan University, Kobe, Hyogo 658-8501, Japan.ORCID 0000-0001-8814-1593
Takashi L ShimadaGraduate School of Horticulture, Chiba University, Matsudo, Chiba 271-8510, Japan.ORCID 0000-0001-6185-4657

Funding

Japan Society for the Promotion of ScienceTakeda Science Foundation
6 · The paper itself

Abstract

Plants accumulate starch and triacylglycerols (TAGs) as carbon sources. Leaves primarily store starch in chloroplasts, with some TAGs stored in lipid droplets, but how carbon resource allocation is regulated in leaves during cellular metabolism is largely unknown. Using a forward genetics approach, we isolated an Arabidopsis thaliana mutant with more lipid droplets in its leaves than the wild type, named lipid rich 1 (liri1). The overaccumulation of lipid droplets was caused by loss of function in the causal gene, encoding an uncharacterized protein. TAG levels were 5-fold higher and starch levels 2-fold lower in the leaves of liri1 than in those of the wild type. LIRI1 localized to the chloroplasts, and contents of chloroplast membrane lipids were 20% higher in liri1 leaves than in wild-type leaves. Co-immunoprecipitation assays revealed that LIRI1 interacts with ACETYL-COENZYME A CARBOXYLASE CARBOXYLTRANSFERASE ALPHA SUBUNIT (an enzyme for fatty acid biosynthesis) and STARCH SYNTHASE 4 (an enzyme for starch biosynthesis). In isotope tracer experiments using [1-13C]sodium acetate, more 13C was incorporated into TAGs in liri1 leaves than in wild-type leaves. Moreover, liri1 plants showed growth defects and irregular chloroplasts. These results indicate that LIRI1 affects the carbon trade-off to inhibit lipid production in leaves.

Indexed as

ArabidopsisArabidopsis ProteinsCarbonStarchTriglyceridesChloroplastsPlant LeavesArabidopsis ProteinsCarbonStarchTriglyceridesArabidopsiscarbon resourcechloroplastforward geneticslipid biosynthesislipid dropletstarchtriacylglycerols

Identifiers

PMID39921382
PMCPMC12116179

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.