Evidence map›Paper›PMID 39920810›Full record

ArticleCell & bioscience2025

Comprehensive landscape and oncogenic role of extrachromosomal circular DNA in malignant biliary strictures.

Zhuo Cheng, Xuanmei Luo, Wenzheng Liu, Xiaofang Lu, Hong Chang, Yingchun Wang, Wei Zheng, Xiue Yan, Yonghui Huang

Abstract read
In one paragraph

Article in Cell & bioscience, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Zhuo Cheng *Department of Gastroenterology and Hepatology, Peking University Third Hospital, Beijing, 100191, China.
Xuanmei Luo *Peking University Fifth School of Clinical Medicine, Beijing, China.
Wenzheng LiuDepartment of Gastroenterology and Hepatology, Peking University Third Hospital, Beijing, 100191, China.
Xiaofang LuDepartment of Gastroenterology, Beijing Tsinghua Changgung Hospital, Beijing, 102218, China.
Hong ChangDepartment of Gastroenterology and Hepatology, Peking University Third Hospital, Beijing, 100191, China.
Yingchun WangDepartment of Gastroenterology and Hepatology, Peking University Third Hospital, Beijing, 100191, China.
Wei ZhengDepartment of Gastroenterology and Hepatology, Peking University Third Hospital, Beijing, 100191, China.
Xiue Yan *Department of Gastroenterology, Beijing Tsinghua Changgung Hospital, Beijing, 102218, China. pskyq@163.com.
Yonghui Huang *Department of Gastroenterology and Hepatology, Peking University Third Hospital, Beijing, 100191, China. 13911765322@163.com.ORCID http://orcid.org/0000-0002-0238-746X

Funding

Capital's Funds for Health Improvement and Research 2022-2Z-40914National Natural Science Foundation of China 82070653Natural Science Foundation of Beijing Municipality 7222207Peking University Third Hospital Clinical Cohort Construction Project Class A BYSYDL2021002
6 · The paper itself

Abstract

backgroundExtrachromosomal circular DNA (eccDNA) is crucial for carcinogenesis and bile has direct contact with malignant biliary strictures, yet eccDNA features in bile and its function in malignant biliary strictures remain underexplored.

resultsWe observed the widespread presence of eccDNA in bile and systematically profiled the landscape of bile cell-free eccDNA (bcf-eccDNA). For functional exploration, a simple and efficient workflow was designed to synthesize large eccDNA particularly containing multiple regions. Compared with the noncancer group, bcf-eccDNAs in the cancer group had different origins and larger sizes with six characteristic peaks. These peaks were also identified in the validation cohort (100%). There were more bcf-eccDNA carrying LINC00598 or CELF2 in malignant biliary strictures, showing potential diagnostic performance in training and validation cohorts (all AUCs > 0.9). Bcf-eccDNAs carried cancer-related mutations, which could guide treatment. EccDNA carrying miR-106a/363 cluster or miR-374b/421 cluster were proven to regulate cancer gene expression, accelerate tumor proliferation, and inhibit tumor apoptosis.

conclusionsThis study profiles a comprehensive bcf-eccDNA landscape in patients with biliary strictures and offers valuable insights into eccDNA's role in bile liquid biopsy and carcinogenesis.

Indexed as

Bile cell-free extrachromosomal circular DNACarcinogenesisDiagnostic biomarkersLiquid biopsy assayMalignant biliary stricturesNanopore sequencing

Identifiers

PMID39920810
PMCPMC11804034

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.