Evidence map›Paper›PMID 39920132›Full record

ArticleNature communications2025

Metabolic deficiencies underlie reduced plasmacytoid dendritic cell IFN-I production following viral infection.

Trever T Greene, Yeara Jo, Carolina Chiale, Monica Macal, Ziyan Fang, Fawziyah S Khatri, Alicia L Codrington, Katelynn R Kazane, Elizabeth Akbulut, Shobha Swaminathan and 6 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Immune cell disorder in viral pneumonia.Journal of translational medicine · 2026
    Review
  6. Review
  7. Review
  8. Article
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  10. Article
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  13. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors.

Trever T GreeneDepartment of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-2960-6631
Yeara JoDepartment of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Carolina ChialeDepartment of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-8432-2802
Monica MacalDepartment of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Ziyan FangDepartment of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Fawziyah S KhatriDepartment of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Alicia L CodringtonDepartment of Pathology, Immunology and Laboratory Medicine, Rutgers New Jersey Medical School, Newark, NJ, USA.
Katelynn R KazaneDepartment of Biological Sciences, University of California, San Diego, La Jolla, CA, USA.
Elizabeth AkbulutDepartment of Pathology, Immunology and Laboratory Medicine, Rutgers New Jersey Medical School, Newark, NJ, USA.
Shobha SwaminathanDepartment of Medicine, Division of Infectious Disease, The State University of New Jersey, Rutgers, New Jersey Medical School, Newark, NJ, USA.
Yu FujitaDivision of Next-Generation Drug Development, Research Center for Medical Sciences, The Jikei University School of Medicine, Tokyo, Japan.ORCID http://orcid.org/0000-0002-8916-7303
Patricia Fitzgerald-BocarslyDepartment of Pathology, Immunology and Laboratory Medicine, Rutgers New Jersey Medical School, Newark, NJ, USA.
Thekla CordesDepartment of Bioinformatics and Biochemistry, Braunschweig Integrated Centre of Systems Biology (BRICS), Technische Universität Braunschweig, Braunschweig, Germany.ORCID http://orcid.org/0000-0002-8097-191X
Christian MetalloMolecular and Cell Biology Laboratory, Salk Institute for Biological Sciences, La Jolla, CA, USA.ORCID http://orcid.org/0000-0003-2404-3040
David A ScottCancer Center, Sanford Burnham Prebys Medical Discovery Institute, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-8668-2449
Elina I ZúñigaDepartment of Biological Sciences, University of California, San Diego, La Jolla, CA, USA. eizuniga@ucsd.edu.ORCID http://orcid.org/0000-0001-8699-1623

Funding

Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI ELENA B PASQUALE · 1985 to 2026
$107.2M
VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SUSAN JANET LITTLE · 1994 to 2026
$78.4M
Single-Cell Transcriptomic and Epigenetics CoreP01AI132122 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZUNIGA, ELINA I · 2018 to 2022
$9.8M
Inhibitory Pathways Underlying Viral Persistence In VivoR01AI081923 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Elina I Zuniga · 2009 to 2026
$6.6M
Positive Immune-regulators During Chronic Viral InfectionsR01AI113923 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZUNIGA, ELINA I · 2015 to 2024
$5.1M
Molecular Mechanisms Underlying Dendritic Cell Adaptations During Chronic InfectionR01AI145314 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZUNIGA, ELINA I · 2020 to 2024
$2.4M
Development and Implementation of Advanced Technologies for Cancer Metabolism ResearchR50CA283813 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI David Anderson Scott · 2023 to 2026
$568k
Identifying and exploiting metabolic vulnerabilities in cancer using mass spectrometry and tracing approachesR50CA252146 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CORDES, THEKLA · 2021 to 2021
$168k
NCI NIH HHS P30 CA030199NCI NIH HHS R50 CA252146NCI NIH HHS R50 CA283813NIAID NIH HHS P01 AI132122NIAID NIH HHS P30 AI036214NIAID NIH HHS R01 AI081923NIAID NIH HHS R01 AI113923NIAID NIH HHS R01 AI145314
6 · The paper itself

Abstract

Type I Interferons (IFN-I) are central to host protection against viral infections, with plasmacytoid dendritic cells (pDC) being the most significant source, yet pDCs lose their IFN-I production capacity following an initial burst of IFN-I, resulting in susceptibility to secondary infections. The underlying mechanisms of these dynamics are not well understood. Here we find that viral infection reduces the capacity of pDCs to engage both oxidative and glycolytic metabolism. Mechanistically, we identify lactate dehydrogenase B (LDHB) as a positive regulator of pDC IFN-I production in mice and humans; meanwhile, LDHB deficiency is associated with suppressed IFN-I production, pDC metabolic capacity, and viral control following infection. In addition, preservation of LDHB expression is sufficient to partially retain the function of otherwise exhausted pDCs, both in vitro and in vivo. Furthermore, restoring LDHB in vivo in pDCs from infected mice increases IFNAR-dependent, infection-associated pathology. Our work thus identifies a mechanism for balancing immunity and pathology during viral infections, while also providing insight into the highly preserved infection-driven pDC inhibition.

Indexed as

Dendritic CellsInterferon Type IL-Lactate DehydrogenaseVirus DiseasesAnimalsFemaleGlycolysisHumansMaleMiceMice, Inbred C57BLMice, KnockoutReceptor, Interferon alpha-betaInterferon Type IL-Lactate DehydrogenaseReceptor, Interferon alpha-beta

Identifiers

PMID39920132
PMCPMC11805920

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.