Evidence map›Paper›PMID 39915737›Full record

ArticleBMC bioinformatics2025

Instance-level semantic segmentation of nuclei based on multimodal structure encoding.

Bo Guan, Guangdi Chu, Ziying Wang, Jianmin Li, Bo Yi

Abstract read
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Article in BMC bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
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1 · What the graph read from it

What it found

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Bo GuanKey Lab for Mechanism Theory and Equipment Design of Ministry of Education, Tianjin University, Tianjin, 300072, China.
Guangdi ChuDepartment of Urology, The Affiliated Hospital of Qingdao University, Qingdao, 266000, China.
Ziying WangDepartment of Medicine, Qingdao University, Qingdao, 266000, China.
Jianmin LiKey Lab for Mechanism Theory and Equipment Design of Ministry of Education, Tianjin University, Tianjin, 300072, China. mjli@tju.edu.cn.
Bo YiDepartment of General Surgery, Third Xiangya Hospital, Central South University, Changsha, 410013, China. yibo2018pro@126.com.

Funding

National Natural Science Foundation of China 52475040Provincial Project on Teaching Reform Research in Higher Education Institutions in Hunan Province 202401000364
6 · The paper itself

Abstract

backgroundAccurate segmentation and classification of cell nuclei are crucial for histopathological image analysis. However, existing deep neural network-based methods often struggle to capture complex morphological features and global spatial distributions of cell nuclei due to their reliance on local receptive fields.

methodsThis study proposes a graph neural structure encoding framework based on a vision-language model. The framework incorporates: (1) A multi-scale feature fusion and knowledge distillation module utilizing the Contrastive Language-Image Pre-training (CLIP) model's image encoder; (2) A method to transform morphological features of cells into textual descriptions for semantic representation; and (3) A graph neural network approach to learn spatial relationships and contextual information between cell nuclei.

resultsExperimental results demonstrate that the proposed method significantly improves the accuracy of cell nucleus segmentation and classification compared to existing approaches. The framework effectively captures complex nuclear structures and global distribution features, leading to enhanced performance in histopathological image analysis.

conclusionsBy deeply mining the morphological features of cell nuclei and their spatial topological relationships, our graph neural structure encoding framework achieves high-precision nuclear segmentation and classification. This approach shows significant potential for enhancing histopathological image analysis, potentially leading to more accurate diagnoses and improved understanding of cellular structures in pathological tissues.

Indexed as

Cell NucleusImage Processing, Computer-AssistedAlgorithmsHumansNeural Networks, ComputerSemanticsCell nucleus segmentationGraph neural networksHistopathological imageMultimodal fusion

Identifiers

PMID39915737
PMCPMC11804060

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.