Evidence map›Paper›PMID 39915638›Full record

ArticleNature metabolism2025

Oncogenic TFE3 fusions drive OXPHOS and confer metabolic vulnerabilities in translocation renal cell carcinoma.

Jiao Li, Kaimeng Huang, Meha Thakur, Fiona McBride, Ananthan Sadagopan, Daniel S Gallant, Prateek Khanna, Yasmin Nabil Laimon, Bingchen Li, Razan Mohanna and 15 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature metabolism, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Review
  2. Article
  3. Chemical Bond-Orchestrated Energy Depletion to Augment Lung Cancer Chemo-Immunotherapy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Cancers · 2026
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors.

Jiao LiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-8027-5877
Kaimeng HuangDepartment of Medicine, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-0552-209X
Meha ThakurDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Fiona McBrideDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Ananthan SadagopanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Daniel S GallantDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Prateek KhannaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Yasmin Nabil LaimonDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.
Bingchen LiDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Razan MohannaDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.
Maolin GeKrantz Family Center for Cancer Research, Massachusetts General Hospital, Boston, MA, USA.
Cary N WeissDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Mingkee AchomDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7908-3368
Qingru XuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Sayed MatarDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.
Gwo-Shu Mary LeeDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.
Kun HuangMolecular Imaging Core and Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-9100-9638
Miao GuiDepartment of Obstetrics and Gynecology, Sir Run Run Shaw Hospital, School of Medicine and Liangzhu Laboratory, Zhejiang University, Hangzhou, China.
Chin-Lee WuDepartment of Pathology, Massachusetts General Hospital, Boston, MA, USA.
Kristine M CornejoDepartment of Pathology, Massachusetts General Hospital, Boston, MA, USA.
Toni K ChoueiriDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID http://orcid.org/0000-0002-9201-3217
Birgitta A RybackDepartment of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA, USA.
Sabina SignorettiDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.
Liron Bar-PeledDepartment of Medicine, Harvard Medical School, Boston, MA, USA. lbar-peled@mgh.harvard.edu.ORCID http://orcid.org/0000-0003-2687-9546
Srinivas R ViswanathanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, USA. srinivas.viswanathan@dfci.harvard.edu.ORCID http://orcid.org/0000-0003-1856-3023

Funding

Probing the role of somatic X-chromosome alterations in shaping cancer sex differencesR01CA286652 · NCI · DANA-FARBER CANCER INST · PI VISWANATHAN, SRINIVAS RAGHAVAN, ZHANG, CHENG-ZHONG · 2023 to 2025
$2.7M
Molecular mechanisms and therapeutic targeting of activated NRF2 signaling in MiT/TFE translocation renal cell carcinomaR01CA279044 · NCI · DANA-FARBER CANCER INST · PI Srinivas Raghavan Viswanathan · 2023 to 2026
$2.0M
Deciphering the Role of Reductive Stress in Non Small Cell Lung CancerR37CA260062 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI Liron Bar-Peled · 2022 to 2026
$1.9M
Damon Runyon Cancer Research Foundation (Cancer Research Fund of the Damon Runyon-Walter Winchell Foundation) 71-22Dana-Farber/Harvard Cancer Center (DF/HCC) 2P50CA101942-16Dana-Farber/Harvard Cancer Center (DF/HCC) 5P30CA006516-56Doris Duke Charitable Foundation (DDCF) 2020101Rally Foundation (Rally Foundation Inc.) 23IN37U.S. Department of Defense (United States Department of Defense) W81XWH-22-1-016U.S. Department of Defense (United States Department of Defense) W81XWH-22-1-0399U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 1R21CA226082-01U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA279044U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA286652U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R37CA260062
6 · The paper itself

Abstract

Translocation renal cell carcinoma (tRCC) is an aggressive subtype of kidney cancer driven by TFE3 gene fusions, which act via poorly characterized downstream mechanisms. Here we report that TFE3 fusions transcriptionally rewire tRCCs toward oxidative phosphorylation (OXPHOS), contrasting with the highly glycolytic nature of most other renal cancers. Reliance on this TFE3 fusion-driven OXPHOS programme renders tRCCs vulnerable to NADH reductive stress, a metabolic stress induced by an imbalance of reducing equivalents. Genome-scale CRISPR screening identifies tRCC-selective vulnerabilities linked to this metabolic state, including EGLN1, which hydroxylates HIF-1α and targets it for proteolysis. Inhibition of EGLN1 compromises tRCC cell growth by stabilizing HIF-1α and promoting metabolic reprogramming away from OXPHOS, thus representing a vulnerability for OXPHOS-dependent tRCC cells. Our study defines tRCC as being dependent on a mitochondria-centred metabolic programme driven by TFE3 fusions and nominates EGLN1 inhibition as a therapeutic strategy in this cancer.

Indexed as

Basic Helix-Loop-Helix Leucine Zipper Transcription FactorsCarcinoma, Renal CellKidney NeoplasmsOxidative PhosphorylationAnimalsCell Line, TumorHumansHypoxia-Inducible Factor 1, alpha SubunitMiceMitochondriaTranslocation, GeneticBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsHypoxia-Inducible Factor 1, alpha SubunitTFE3 protein, human

Identifiers

PMID39915638

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.