Evidence map›Paper›PMID 39914488›Full record

ArticleJournal of advanced research2025

A functional cascading of lignin modification via repression of caffeic acid O-methyltransferase for bioproduction and anti-oxidation in rice.

Hua Yu, Guifen Zhang, Jingyuan Liu, Peng Liu, Hao Peng, Zhipeng Teng, Yong Li, Xifeng Ren, Chunxiang Fu, Jingfeng Tang and 4 more

Abstract read
In one paragraph

Article in Journal of advanced research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Hua YuKey Laboratory of Fermentation Engineering (Ministry of Education), National "111" Center for Cellular Regulation & Molecular Pharmaceutics, Hubei Key Laboratory of Industrial Microbiology, School of Life and Health Sciences, Hubei University of Technology, Wuhan 430068, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China.
Guifen ZhangCollege of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China.
Jingyuan LiuShandong Provincial Key Laboratory of Energy Genetics, CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy & Bioprocess Technology, Chinese Academy of Sciences, Shandong Energy Institute, Qingdao New Energy Shandong Laboratory, Qingdao 266101, China.
Peng LiuKey Laboratory of Fermentation Engineering (Ministry of Education), National "111" Center for Cellular Regulation & Molecular Pharmaceutics, Hubei Key Laboratory of Industrial Microbiology, School of Life and Health Sciences, Hubei University of Technology, Wuhan 430068, China.
Hao PengKey Laboratory of Fermentation Engineering (Ministry of Education), National "111" Center for Cellular Regulation & Molecular Pharmaceutics, Hubei Key Laboratory of Industrial Microbiology, School of Life and Health Sciences, Hubei University of Technology, Wuhan 430068, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China.
Zhipeng TengCollege of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China.
Yong LiCollege of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China.
Xifeng RenCollege of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China.
Chunxiang FuShandong Provincial Key Laboratory of Energy Genetics, CAS Key Laboratory of Biofuels, Qingdao Institute of Bioenergy & Bioprocess Technology, Chinese Academy of Sciences, Shandong Energy Institute, Qingdao New Energy Shandong Laboratory, Qingdao 266101, China.
Jingfeng TangKey Laboratory of Fermentation Engineering (Ministry of Education), National "111" Center for Cellular Regulation & Molecular Pharmaceutics, Hubei Key Laboratory of Industrial Microbiology, School of Life and Health Sciences, Hubei University of Technology, Wuhan 430068, China.
Mi LiCenter for Renewable Carbon, School of Natural Resources, University of Tennessee-Knoxville, Knoxville, TN 37996, United States.
Yanting WangKey Laboratory of Fermentation Engineering (Ministry of Education), National "111" Center for Cellular Regulation & Molecular Pharmaceutics, Hubei Key Laboratory of Industrial Microbiology, School of Life and Health Sciences, Hubei University of Technology, Wuhan 430068, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China.
Lingqiang WangCollege of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China; State Key Laboratory for Conservation & Utilization of Subtropical Agro-Bioresources, College of Agriculture, Guangxi University, Nanning 530004, China. Electronic address: lqwang@gxu.edu.cn.
Liangcai PengKey Laboratory of Fermentation Engineering (Ministry of Education), National "111" Center for Cellular Regulation & Molecular Pharmaceutics, Hubei Key Laboratory of Industrial Microbiology, School of Life and Health Sciences, Hubei University of Technology, Wuhan 430068, China; College of Plant Science & Technology, Huazhong Agricultural University, Wuhan 430070, China. Electronic address: lpeng@mail.hzau.edu.cn.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionCrop straws provide substantial biomass resources that are transformable for sustainable biofuels and valuable bioproducts. However, the natural lignocellulose recalcitrance results in an expensive biomass process and secondary waste liberation. As lignin is a major recalcitrant factor, genetic engineering of lignin biosynthesis is increasingly being implemented in bioenergy crops, but much remains unclear about the desired lignocellulose alteration and resulting function.

objectivesThis study attempted to explore the mechanisms of lignin modification responsible for efficient lignocellulose conversion in vitro and an effective plant anti-oxidation response in vivo.

methodsWe initially selected specific rice mutants by performing modern CRISPR/cas9 editing with caffeic acid O-methyltransferase involved in the synthetic pathways of monolignols (G, S) and ferulic acid (FA), and then explored lignocellulose conversion and plant cadmium (Cd) accumulation using advanced chemical, biochemical and thermal-chemical analyses.

resultsNotable lignin modification was achieved from the predominately synergistic down-regulation of S-monomer synthesis in three mutants. This consequently upgraded lignocellulose porosity by up to 1.8 folds to account for significantly enhanced biomass saccharification and bioethanol production by 20 %-26 % relative to the wild-type. The modified lignin also favors the dissection of diverse lignin nanoparticles with dimensions reduced by 1.5-1.9 folds, applicable for thermal-chemical conversion into the carbon quantum dots with increased yields by 15 % and 31 %. The proportions of G-monomers and FA were significantly increased in the mutants, and the lignin extractions were further assayed with higher activities for two standard antioxidants (DPPH and ABTS) in vitro compared to the wild-type, revealing a distinctively enhanced plant antioxidative capacity in the mutants. Water culture showed that young mutant seedlings accumulated more Cd than wild-type did (p < 0.01, n = 3), suggesting effective heavy metal phytoremediation in the mutants.

conclusionA hypothetical model of characteristic lignin modification for specific S-monomer reduction, accountable for improved lignocellulose recalcitrance, was proposed. It provides a powerful strategy for achieving high-yield biofuels and value-added bioproducts or enhancing plant antioxidative capacity for heavy metal phytoremediation.

Indexed as

LigninMethyltransferasesOryzaAntioxidantsBiomassCadmiumCoumaric AcidsCRISPR-Cas SystemsMutationOxidation-ReductionPlant ProteinsAntioxidantsCadmiumcaffeate O-methyltransferaseCoumaric Acidsferulic acidLigninlignocelluloseMethyltransferasesPlant ProteinsAntioxidantsCellulosic ethanolGene editingLignin biosynthesisNanomaterialsPlant phytoremediation

Identifiers

PMID39914488
PMCPMC12684893

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.