Evidence map›Paper›PMID 39913260›Full record

ArticleThe Journal of antimicrobial chemotherapy2025

rpoB mutations and their association with rifampicin resistance in clinical Staphylococcus epidermidis.

Sofie Marie Edslev, Mia Aarris, Karen Leth Nielsen, Frederik B Hertz, Thor Bech Johannesen, Camille Kolenda, Frederic Laurent, Emeli Månsson, Bo Söderquist, Marc Stegger

Abstract read
In one paragraph

Article in The Journal of antimicrobial chemotherapy, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sofie Marie EdslevDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.
Mia AarrisDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.ORCID 0009-0001-7074-3219
Karen Leth NielsenDepartment of Clinical Microbiology, Copenhagen University Hospital - Rigshospitalet, Copenhagen, Denmark.
Frederik B HertzDepartment of Clinical Microbiology, Copenhagen University Hospital - Rigshospitalet, Copenhagen, Denmark.
Thor Bech JohannesenDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.
Camille KolendaEuropean Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group for Staphylococci and Staphylococcal Diseases (ESGS), Basel, Switzerland.ORCID 0000-0002-3716-0521
Frederic LaurentEuropean Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group for Staphylococci and Staphylococcal Diseases (ESGS), Basel, Switzerland.ORCID 0000-0003-0609-9091
Emeli MånssonEuropean Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group for Staphylococci and Staphylococcal Diseases (ESGS), Basel, Switzerland.
Bo SöderquistEuropean Society of Clinical Microbiology and Infectious Diseases (ESCMID) Study Group for Staphylococci and Staphylococcal Diseases (ESGS), Basel, Switzerland.ORCID 0000-0001-5939-2932
Marc SteggerDepartment of Sequencing and Bioinformatics, Statens Serum Institut, Copenhagen, Denmark.

Funding

Nyckelfonden at Örebro University Hospital OLL-502241
6 · The paper itself

Abstract

backgroundStaphylococcus epidermidis is a ubiquitous member of the healthy skin and mucous microbiota but is also an opportunistic pathogen responsible for various infections, often treated with antibiotics like rifampicin. Resistance to rifampicin in S. epidermidis arises primarily through nonsynonymous mutations in the rpoB gene.

objectivesTo investigate the prevalence of rpoB mutations and their association with phenotypic rifampicin resistance in clinical S. epidermidis isolates from Denmark, France, and Sweden.

methodsAll clinical isolates (N = 942) were whole-genome sequenced to identify mutations in rpoB and subsequently linked to phenotypic rifampicin resistance based on antimicrobial susceptibility testing.

resultsA total of 64 (6.8%) isolates were resistant to rifampicin. They carried all mutational changes in the rifampicin resistance-determining region (RRDR). Among 12 identified nonsynonymous mutations, 11 were exclusively observed in resistant strains, including novel mutations not previously described in S. epidermidis.

conclusionsThis study highlights the diverse genetic variants of rpoB associated with rifampicin resistance in clinical S. epidermidis isolates, including novel mutations. The strong correlation between mutational changes in RRDR and phenotypic resistance reinforces the role of rpoB mutations as a primary mechanism of resistance in clinical isolates.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsDNA-Directed RNA PolymerasesDrug Resistance, BacterialMutationRifampinStaphylococcus epidermidisDenmarkFranceHumansMicrobial Sensitivity TestsStaphylococcal InfectionsSwedenWhole Genome SequencingAnti-Bacterial AgentsBacterial ProteinsDNA-Directed RNA PolymerasesRifampinRNA polymerase beta subunit

Identifiers

PMID39913260
PMCPMC11962384

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.