Evidence map›Paper›PMID 39912912›Full record

ArticleCancer discovery2025

High-purity CTC RNA sequencing identifies prostate cancer lineage phenotypes prognostic for clinical outcomes.

Marina N Sharifi, Jamie M Sperger, Amy K Taylor, Katharine E Tippins, Shannon R Reese, Viridiana Carreno, Katherine R Kaufmann, Alex H Chang, Luke A Nunamaker, Charlotte Linebarger and 26 more

Abstract read
In one paragraph

Article in Cancer discovery, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors.

Marina N SharifiUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0000-0003-0128-3033
Jamie M SpergerUniversity of Wisconsin-Madison, Madison, WISCONSIN, United States.ORCID 0000-0001-8578-8033
Amy K TaylorUniversity of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0000-0003-4559-4159
Katharine E TippinsUniversity of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0009-0003-5198-365X
Shannon R ReeseUniversity of Wisconsin-Madison.ORCID 0000-0002-6760-8876
Viridiana CarrenoUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0009-0009-3297-8541
Katherine R KaufmannUniversity of Wisconsin-Madison, Madison, WISCONSIN, United States.ORCID 0000-0002-5157-9214
Alex H ChangUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0000-0002-8062-1186
Luke A NunamakerUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0009-0000-2983-6475
Charlotte LinebargerUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0009-0001-0616-8774
Leilani Mora-RodriguezUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0009-0000-2721-7718
Jennifer L SchehrUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0000-0003-2123-997X
Hannah M KrauseUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0000-0002-3154-9990
Kyle T HelzerUniversity of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0000-0003-3853-5564
Matthew L BootsmaUniversity of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0000-0003-0879-5066
Grace C BlitzerUniversity of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0000-0003-3178-3004
John M FlobergWashington University in St. Louis, St. Louis, Missouri, United States.ORCID 0000-0002-7635-7554
Christos E KyriakopoulosUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0000-0002-6452-7405
Hamid EmamekhooUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0000-0002-8506-8703
Elisabeth I HeathMayo Clinic, Rochester, MN, United States.ORCID 0000-0003-1381-2713
Meghan WellsUniversity of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0009-0001-7482-4155
Scott T TagawaWeill Cornell Medicine, New York, NY, United States.ORCID 0000-0003-2777-8587
Martin SjöströmUniversity of California, San Francisco, San Francisco, CA, United States.ORCID 0000-0002-2629-9966
Atish D ChoudhuryDana-Farber Cancer Institute, Boston, MA, United States.ORCID 0000-0001-9344-6631
Menggang YuUniversity of Michigan-Ann Arbor, United States.ORCID 0000-0002-7904-3155
Andrew J ArmstrongDuke University, Durham, NC, United States.ORCID 0000-0001-7012-1754
Dana E RathkopfMemorial Sloan Kettering Cancer Center, New York, New York, United States.ORCID 0000-0002-4503-7582
Himisha BeltranDana-Farber Cancer Institute, Boston, MA, United States.ORCID 0000-0003-3259-2226
Peter S NelsonFred Hutchinson Cancer Center, Seattle, WA, United States.ORCID 0000-0002-5451-5726
Felix Y FengUCSF Helen Diller Family Comprehensive Cancer Center, San Francisco, California, United States.ORCID 0000-0002-0963-7687
Scott M DehmUniversity of Minnesota, Minneapolis, MN, United States.ORCID 0000-0002-7827-5579
David KosoffUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0000-0001-8559-6357
Xiao X WeiDana-Farber Cancer Institute, Boston, MA, United States.ORCID 0000-0001-7093-0383
Rana R McKayUniversity of California, San Diego, La Jolla, CA, United States.ORCID 0000-0002-0581-7963
Shuang G ZhaoUniversity of Wisconsin-Madison, Madison, Wisconsin, United States.ORCID 0000-0002-9166-6507
Joshua M LangUniversity of Wisconsin-Madison, Madison, WI, United States.ORCID 0000-0002-0943-8872

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
UW COMPREHENSIVE CANCER CENTER SUPPORTP30CA014520 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Christian Capitini · 1985 to 2026
$142.6M
TRANSCRIPTOME AND PROTEOME STRATIFICATION OF PROSTATE ADENOCARCINOMA PHENOTYPESP50CA097186 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI PETER S NELSON · 2002 to 2026
$58.1M
University of Wisconsin Prostate SPOREP50CA269011 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI DAVID F. JARRARD, DOUGLAS G. MCNEEL · 2023 to 2026
$10.6M
Molecular mechanisms underlying lineage plasticity in prostate cancerR37CA241486 · NCI · DANA-FARBER CANCER INST · PI Himisha Beltran · 2020 to 2026
$4.1M
Clinical genomic predictive model of first line androgen receptor inhibitor therapy outcomes in men with mCRPCR01CA256157 · NCI · DUKE UNIVERSITY · PI ARMSTRONG, ANDREW J, DEHM, SCOTT M. · 2020 to 2025
$3.2M
Enhancing Epigenetic Analysis Of Rare Cells With Multi-Phase MicrofluidicsR01CA247479 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI BEEBE, DAVID J, LANG, JOSHUA MICHAEL · 2020 to 2024
$3.1M
Molecular regulation and expression of Trop-2 in advanced prostate cancer: Identifying optimal therapeutic nichesR01CA276269 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Scott M. Dehm, Joshua Lang · 2023 to 2026
$2.6M
Evaluating prostate cancer phenotype and genotype classification from circulating tumor DNA as biomarkers for predicting treatment outcomesR01CA280056 · NCI · FRED HUTCHINSON CANCER CENTER · PI Gavin Ha, PETER S NELSON · 2023 to 2026
$2.4M
Defining and Targeting Lineage Transition Programs Operative in AR Pathway Independent Prostate CancerR01CA234715 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI NELSON, PETER S · 2020 to 2024
$2.0M
Targeting Vulnerabilities Exposed by Cancer Treatment-Induced Lineage PlasticityR01CA266452 · NCI · FRED HUTCHINSON CANCER CENTER · PI PETER S NELSON · 2022 to 2026
$2.0M
Validation of predictive liquid biomarkers for patients with metastatic prostate cancerUH2CA260389 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI ARMSTRONG, ANDREW J, HALABI, SUSAN · 2021 to 2022
$352k
NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA014520NCI NIH HHS P50 CA097186NCI NIH HHS P50 CA269011NCI NIH HHS R01 CA234715NCI NIH HHS R01 CA247479NCI NIH HHS R01 CA256157NCI NIH HHS R01 CA266452NCI NIH HHS R01 CA276269NCI NIH HHS R01 CA280056NCI NIH HHS R37 CA241486NCI NIH HHS R50 CA283815NCI NIH HHS R50 CA293840NCI NIH HHS UH2 CA260389
6 · The paper itself

Abstract

The development of treatment resistance remains universal for patients with metastatic prostate cancer, driven by AR alterations and lineage state transitions. Identifying the evolution of lineage transitions in treatment resistance has been limited by the challenges of collecting serial tissue biopsies on treatment, which can be overcome using blood-based liquid biopsies. Utilizing a novel circulating tumor cell (CTC) isolation approach, we collected 273 CTC samples from 117 patients with metastatic prostate cancer for RNA sequencing. 146 samples from 70 patients had tumor purity comparable to tissue biopsies. We identified four CTC transcriptional phenotypes, mirroring lineage states identified in tissue. Patients with a luminal-B-like CTC phenotype defined by persistent AR signaling and high proliferation, as well as those with a neuroendocrine CTC phenotype, had significantly shorter survival than patients with luminal-A-like and low proliferation phenotypes. In a prospective substudy, pre-treatment CTC luminal-B-like phenotype was associated with early progression on 177Lu-PSMA-617.

Indexed as

Neoplastic Cells, CirculatingProstatic NeoplasmsAgedBiomarkers, TumorCell LineageHumansMaleMiddle AgedPhenotypePrognosisSequence Analysis, RNABiomarkers, Tumor

Identifiers

PMID39912912
PMCPMC12046329

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.