Evidence map›Paper›PMID 39912583›Full record

ArticleOrganic & biomolecular chemistry2025

A system for in vitro selection of fully 2'-modified RNA aptamers.

Emily D Ziperman, Kate B Fitzpatrick, Malavika A Nair, Alexander W Sorum, Linda C Hsieh-Wilson, Isaac J Krauss

Abstract read
In one paragraph

Article in Organic & biomolecular chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. ACS central science · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Emily D ZipermanDepartment of Chemistry, Brandeis University, Waltham, Massachusetts, USA. kraussi@brandeis.edu.ORCID 0000-0002-2180-0854
Kate B FitzpatrickDepartment of Chemistry, Brandeis University, Waltham, Massachusetts, USA. kraussi@brandeis.edu.ORCID 0009-0002-4389-1969
Malavika A NairDepartment of Chemistry, Brandeis University, Waltham, Massachusetts, USA. kraussi@brandeis.edu.
Alexander W SorumDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.ORCID 0000-0003-2526-1445
Linda C Hsieh-WilsonDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California, USA.ORCID 0000-0001-5661-1714
Isaac J KraussDepartment of Chemistry, Brandeis University, Waltham, Massachusetts, USA. kraussi@brandeis.edu.ORCID 0000-0003-0984-4085

Funding

Predoctoral Training in Cross-Disciplinary Molecular and Cellular BiologyT32GM139798 · NIGMS · BRANDEIS UNIVERSITY · PI Paul Garrity, Bruce L Goode · 2021 to 2026
$3.5M
Evolving New Glycosaminoglycan MimeticsR01GM127920 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI HSIEH-WILSON, LINDA C · 2018 to 2021
$1.5M
Technology for Directed Evolution of GlycoaptamersR01GM151492 · NIGMS · BRANDEIS UNIVERSITY · PI Isaac Jonathan Krauss · 2023 to 2026
$1.5M
A 400 MHz NMR SpectrometerS10OD034395 · OD · BRANDEIS UNIVERSITY · PI KRAUSS, ISAAC JONATHAN · 2023 to 2023
$482k
National Science Foundation 2139752NIGMS NIH HHS R01 GM127920NIGMS NIH HHS R01 GM151492NIGMS NIH HHS T32 GM139798NIH HHS S10 OD034395
6 · The paper itself

Abstract

SFM4-3, KOD DGLNK, and Therminator polymerase are investigated for their compatibility with SELection with Modified Aptamers (SELMA), an aptamer discovery method that enables incorporation of large nucleobase modifications such as glycans. We demonstrated that with suitable modifications to the primer design and protocol, these enzymes are compatible with SELMA, enabling 2'-fluoro or 2'-methoxy ribose modifications at all positions. In the case of 2'-fluoro modifications, Therminator exhibits cleaner incorporation of an alkyne-modified nucleobase for click chemistry.

Indexed as

Aptamers, NucleotideSELEX Aptamer TechniqueClick ChemistryAptamers, Nucleotide

Identifiers

PMID39912583
PMCPMC12289301

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.