Evidence map›Paper›PMID 39911144›Full record

ArticlePathogens & immunity2024

The TB27 Transcriptomic Model for Predicting

Maja Reimann, Korkut Avsar, Andrew R DiNardo, Torsten Goldmann, Gunar Günther, Michael Hoelscher, Elmira Ibraim, Barbara Kalsdorf, Stefan H E Kaufmann, Niklas Köhler and 18 more

Abstract read
In one paragraph

Article in Pathogens & immunity, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Maja ReimannClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Korkut AvsarAsklepios Fachkliniken München-Gauting, Munich, Germany.
Andrew R DiNardoThe Global Tuberculosis Program, Texas Children's Hospital, Immigrant and Global Health, Department of Pediatrics, Baylor College of Medicine, Houston, Texas.
Torsten GoldmannDivision of Histopathology, Research Center Borstel, Leibniz Lung Center, Borstel, Germany.
Gunar GüntherDepartment of Medicine, University of Namibia School of Medicine, Windhoek, Namibia.
Michael HoelscherDivision of Infectious Diseases and Tropical Medicine, University Hospital, LMU Munich, Munich, Germany.
Elmira IbraimInstitutul de Pneumoftiziologie "Marius Nasta", MDR-TB Research Department, Bucharest, Romania.
Barbara KalsdorfClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Stefan H E KaufmannMax Planck Institute for Infection Biology, Berlin, Germany.
Niklas KöhlerClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Anna M MandalakasClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Florian P MaurerNational and WHO Supranational Reference Laboratory for Mycobacteria, Research Center Borstel, Borstel, Germany.
Marius MüllerSankt Katharinen-Krankenhaus, Frankfurt, Germany.
Dörte NitschkowskiDivision of Histopathology, Research Center Borstel, Leibniz Lung Center, Borstel, Germany.
Ioana D OlaruClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Cristina PopaInstitutul de Pneumoftiziologie "Marius Nasta", MDR-TB Research Department, Bucharest, Romania.
Andrea RachowDivision of Infectious Diseases and Tropical Medicine, University Hospital, LMU Munich, Munich, Germany.
Thierry RollingCharité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Germany.
Helmut J F SalzerClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Patricia Sanchez-CarballoClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Maren Schuhmannnew affiliation: Lungenpraxis Konstanz, Konstanz, Germany.
Dagmar SchaubClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Victor SpinuInstitutul de Pneumoftiziologie "Marius Nasta", MDR-TB Research Department, Bucharest, Romania.
Elena TerhalleClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Markus UnnewehrDepartment of Respiratory Medicine and Infectious Diseases, St. Barbara-Klinik, Hamm, Germany.
Nika J ZielinskiClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Jan HeyckendorfClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.
Christoph LangeClinical Infectious Diseases, Research Center Borstel, Borstel, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rationale: Treatment monitoring of tuberculosis patients is complicated by a slow growth rate of Objective: Identifying and validating a whole blood-based RNA signature model to predict microbiological treatment responses in patients on tuberculosis therapy. Methods: Using a multi-step machine learning algorithm to identify an RNA-based algorithm to predict the remaining time to culture conversion at flexible time points during anti-tuberculosis therapy. Results: The identification cohort included 149 patients split into a training and a test cohort, to develop a multistep algorithm consisting of 27 genes (TB27) for predicting the remaining time to culture conversion (TCC) at any given time. In the test dataset, predicted TCC and observed TCC achieved a correlation coefficient of Conclusion: We identified and validated a whole blood-based RNA signature (TB27) that demonstrates an excellent agreement between predicted and observed times to

Indexed as

biomarkerprecision medicinesystems biologytherapy responsetuberculosis treatment

Identifiers

PMID39911144
PMCPMC11792529

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.