Evidence map›Paper›PMID 39910051›Full record

ArticleScientific data2025

Molecular characterization of Pseudomyxoma peritonei with single-cell and bulk RNA sequencing.

Ye Jin Ha, Seong-Hwan Park, Seon-Kyu Kim, Ka Hee Tak, Jeong-Hwan Kim, Chan Wook Kim, Yong Sik Yoon, Seon-Young Kim, Jong Lyul Lee

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ye Jin Ha *Asan Institute for Life Sciences, Asan Medical Center, Seoul, 05505, Korea.ORCID http://orcid.org/0000-0003-2001-7435
Seong-Hwan Park *Aging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Korea.
Seon-Kyu Kim *Aging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Korea.ORCID http://orcid.org/0000-0002-4176-5187
Ka Hee TakAsan Institute for Life Sciences, Asan Medical Center, Seoul, 05505, Korea.
Jeong-Hwan KimAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, 34141, Korea.
Chan Wook KimAsan Institute for Life Sciences, Asan Medical Center, Seoul, 05505, Korea.
Yong Sik YoonAsan Institute for Life Sciences, Asan Medical Center, Seoul, 05505, Korea.
Seon-Young KimDepartment of Bioscience, University of Science and Technology, Daejeon, 34113, Korea. kimsy@kribb.re.kr.ORCID http://orcid.org/0000-0002-1030-7730
Jong Lyul LeeAsan Institute for Life Sciences, Asan Medical Center, Seoul, 05505, Korea. iamleejong@amc.seoul.kr.

Funding

Asan Institute for Life Sciences, Asan Medical Center 2022IP0045
6 · The paper itself

Abstract

Pseudomyxoma peritonei (PMP), a rare condition characterized by mucinous ascites in the peritoneal cavity, often leads to a poor prognosis. However, omics profiling of this disease remains significantly underexplored. Here, we present single-cell transcriptomic profiling of five PMP cases to identify cell type-specific gene features associated with PMP pathogenesis. Additionally, we provide bulk RNA-seq datasets from two independent cohorts: 19 fresh frozen tissue samples (12 PMPs) and 34 formalin-fixed paraffin-embedded (FFPE) samples (25 PMPs). We also offer protein expression data from a tissue microarray (TMA) analysis of 90 samples (45 PMPs). Our single-cell and bulk transcriptomic profiles, along with TMA verifications, reveal the cellular diversity of PMP, highlighting the coexistence of epithelial and mesenchymal characteristics within PMP cells. These datasets enhance our understanding of PMP pathogenesis and provide a valuable resource for uncovering the intricate molecular landscape of PMP, with the potential to improve clinical utility through further research.

Indexed as

Peritoneal NeoplasmsPseudomyxoma PeritoneiGene Expression ProfilingHumansSequence Analysis, RNASingle-Cell AnalysisTranscriptome

Identifiers

PMID39910051
PMCPMC11799422

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.