Evidence map›Paper›PMID 39908115›Full record

ArticleMolecular biology of the cell2025

Regulation of p65 nuclear localization and chromatin states by compressive force.

Rajshikhar Gupta, Paulina Schärer, Yawen Liao, Bibhas Roy, Roger M Benoit, G V Shivashankar

Abstract read
In one paragraph

Article in Molecular biology of the cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Chromatin accessibility regulates age-dependent nuclear mechanotransduction.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Rajshikhar GuptaLaboratory of Multiscale Bioimaging, Paul Scherrer Institut, Villigen, Aargau, Switzerland 5232.
Paulina SchärerLaboratory of Multiscale Bioimaging, Paul Scherrer Institut, Villigen, Aargau, Switzerland 5232.
Yawen LiaoLaboratory of Multiscale Bioimaging, Paul Scherrer Institut, Villigen, Aargau, Switzerland 5232.
Bibhas RoyLaboratory of Multiscale Bioimaging, Paul Scherrer Institut, Villigen, Aargau, Switzerland 5232.
Roger M BenoitLaboratory of Multiscale Bioimaging, Paul Scherrer Institut, Villigen, Aargau, Switzerland 5232.
G V ShivashankarLaboratory of Multiscale Bioimaging, Paul Scherrer Institut, Villigen, Aargau, Switzerland 5232.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The tumor microenvironment (TME) is a dynamic ecosystem, that evolves with the developing tumor to support its growth and metastasis. A key aspect of TME evolution is the recruitment of stromal fibroblasts, carried out via the release of various tumor signals including tumor necrosis factor (TNFα). These tumor signals in turn alter the mechanical properties of the TME as the tumor grows. Because of the important role of stromal cells in supporting tumor progression, new therapies aim to target stromal fibroblasts. However, these therapies have been unsuccessful in part due to the limited understanding of cross-talk between chemical and altered mechanical signaling within stromal fibroblasts. To investigate this, we designed a coculture assay with YFP-TNFα releasing spheroids embedded within collagen gels alongside fibroblasts to mimic the stromal response within the TME. This resulted in the nuclear translocation of p65 in the stromal fibroblasts which was further intensified by the addition of compressive stress. The combination of mechanical and chemical signals led to cytoskeletal disruption and induced a distinct chromatin state in the stromal fibroblasts. These results highlight the important cross-talk between cytokine signaling and mechanical forces on stromal cells within the TME and facilitate the development of a better spheroid model for therapeutic interventions.

Indexed as

ChromatinTranscription Factor RelACell NucleusCoculture TechniquesFibroblastsHumansSignal TransductionSpheroids, CellularStress, MechanicalStromal CellsTumor MicroenvironmentTumor Necrosis Factor-alphaChromatinTranscription Factor RelATumor Necrosis Factor-alpha

Identifiers

PMID39908115
PMCPMC12005105

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.