Evidence map›Paper›PMID 39907106›Full record

ArticleNucleic acids research2025

Context-specific inhibition of mitochondrial ribosomes by phenicol and oxazolidinone antibiotics.

Brianna Bibel, Tushar Raskar, Mary Couvillion, Muhoon Lee, Jordan I Kleinman, Nono Takeuchi-Tomita, L Stirling Churchman, James S Fraser, Danica Galonić Fujimori

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Approaches for Studying Context Specificity of Translation Inhibitor Action.International journal of molecular sciences · 2026
    Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Linezolid in the Focus of Antimicrobial Resistance ofInternational journal of molecular sciences · 2025
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Brianna BibelDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94143, United States.ORCID 0000-0001-8543-151X
Tushar RaskarDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94143, United States.ORCID 0000-0001-7188-7428
Mary CouvillionDepartment of Genetics, Harvard Medical School, Boston, MA 02115, United States.ORCID 0000-0002-6259-6431
Muhoon LeeDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8562, Japan.
Jordan I KleinmanDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94143, United States.ORCID 0000-0001-7146-824X
Nono Takeuchi-TomitaDepartment of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa-shi, Chiba 277-8562, Japan.ORCID 0000-0003-4304-2633
L Stirling ChurchmanDepartment of Genetics, Harvard Medical School, Boston, MA 02115, United States.ORCID 0000-0003-3888-2574
James S FraserDepartment of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA 94143, United States.ORCID 0000-0002-5080-2859
Danica Galonić FujimoriDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94143, United States.ORCID 0000-0002-4066-9417

Funding

Radical SAM-dependent methylation in antibiotic resistanceR01AI137270 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Danica Galonic Fujimori · 2018 to 2026
$3.8M
Research Training in Chemistry and Chemical BiologyT32GM145460 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Jason E Gestwicki · 2022 to 2026
$3.1M
Nuclear-mitochondrial co-regulation during mitochondrial biogenesisR01GM123002 · NIGMS · HARVARD MEDICAL SCHOOL · PI CHURCHMAN, LEE STIRLING · 2017 to 2020
$1.3M
Japan Society for the Promotion of Science 23H04252National Institute of Allergy and Infectious Diseases R01AI137270NIAID NIH HHS R01 AI137270NIGMS NIH HHS R01 GM123002NIGMS NIH HHS R01GM123002NIGMS NIH HHS T32 GM145460University of CaliforniaW.M. Keck Foundation Medical Research
6 · The paper itself

Abstract

The antibiotics chloramphenicol (CHL) and oxazolidinones, including linezolid (LZD), are known to inhibit mitochondrial translation. This can result in serious, potentially deadly, side effects when used therapeutically. Although the mechanism by which CHL and LZD inhibit bacterial ribosomes has been elucidated in detail, their mechanism of action against mitochondrial ribosomes has yet to be explored. CHL and oxazolidinones bind to the ribosomal peptidyl transfer center (PTC) of the bacterial ribosome and prevent incorporation of incoming amino acids under specific sequence contexts, causing ribosomes to stall only at certain sequences. Through mitoribosome profiling, we show that inhibition of mitochondrial ribosomes is similarly context-specific-CHL and LZD lead to mitoribosome stalling primarily when there is an alanine, serine, or threonine in the penultimate position of the nascent peptide chain. We further validate context-specific stalling through in vitro translation assays. A high-resolution cryo-electron microscopy structure of LZD bound to the PTC of the human mitoribosome shows extensive similarity to the mode of bacterial inhibition and also suggests potential avenues for altering selectivity. Our findings could help inform the rational development of future, less mitotoxic, antibiotics, which are critically needed in the current era of increasing antimicrobial resistance.

Indexed as

Anti-Bacterial AgentsChloramphenicolMitochondrial RibosomesOxazolidinonesCryoelectron MicroscopyHumansLinezolidMitochondriaProtein BiosynthesisProtein Synthesis InhibitorsRibosomesAnti-Bacterial AgentsChloramphenicolLinezolidOxazolidinonesProtein Synthesis Inhibitors

Identifiers

PMID39907106
PMCPMC11795202

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.